NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000477

3300000477: Alkaline sediment microbial communities from Lake Bitter, Kulunda Steppe, Russia - 5KL_010_SED



Overview

Basic Information
IMG/M Taxon OID3300000477 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063439 | Gp0053562 | Ga0026747
Sample NameAlkaline sediment microbial communities from Lake Bitter, Kulunda Steppe, Russia - 5KL_010_SED
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size312269109
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Predicted Viral3
Not Available3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAlkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → lake → lake sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationRussia: Kulunda Steppe, Lake Bitter
CoordinatesLat. (o)51.4Long. (o)79.54Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011425Metagenome291Y
F015419Metagenome / Metatranscriptome255Y
F066493Metagenome126Y
F079661Metagenome115Y
F094519Metagenome106Y
F098192Metagenome104Y
F105255Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
SL_5KL_010_SEDDRAFT_10000930All Organisms → cellular organisms → Bacteria18339Open in IMG/M
SL_5KL_010_SEDDRAFT_10009687All Organisms → Viruses → Predicted Viral3811Open in IMG/M
SL_5KL_010_SEDDRAFT_10010048All Organisms → Viruses → Predicted Viral3711Open in IMG/M
SL_5KL_010_SEDDRAFT_10026660All Organisms → Viruses → Predicted Viral1742Open in IMG/M
SL_5KL_010_SEDDRAFT_10044458Not Available1104Open in IMG/M
SL_5KL_010_SEDDRAFT_10055460Not Available911Open in IMG/M
SL_5KL_010_SEDDRAFT_10070336All Organisms → cellular organisms → Bacteria744Open in IMG/M
SL_5KL_010_SEDDRAFT_10080260Not Available669Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
SL_5KL_010_SEDDRAFT_10000930SL_5KL_010_SEDDRAFT_1000093017F011425MPDRRHFLSTLAGASLAGAAGLVRPPSLSAAPTAWL
SL_5KL_010_SEDDRAFT_10009687SL_5KL_010_SEDDRAFT_1000968711F015419MKYEIKITDEAGNVSSYNLTCSSSDQPKNLNDFILDALRVSEDKRKLPFMIQCPNGLEVYPSIKMKFENYGSALLDDKLEAMHVTWRD*
SL_5KL_010_SEDDRAFT_10010048SL_5KL_010_SEDDRAFT_100100485F094519MSKNVLKTVEQLSIGTTTSIGSTSWGGQTDGIGSVMGSTWSAKIIEDAQPDRVLSKYFLEFNDLMGNNDVTLIIPKIGDVNLMGGRAGSAEGKSRVLTAFDSADNITVSLTADDVKLGGCAISFETASATRVSIINMAHKQLTRQYLETIETDGNALLESATVSADAASAVFGGDATQTSELEDGD
SL_5KL_010_SEDDRAFT_10026660SL_5KL_010_SEDDRAFT_100266605F079661MTEKTTIEVSEDVRDRLKDERLPHESNYSNTIRRLLSDGTGGQLWTEAEIRDMARDEAESLARGGR*
SL_5KL_010_SEDDRAFT_10044458SL_5KL_010_SEDDRAFT_100444581F066493SQREWHDGVVDVADELVQEHGAQGALERLNNRRQSTRSDELQARCEAAMAWIKREVNDE*
SL_5KL_010_SEDDRAFT_10055460SL_5KL_010_SEDDRAFT_100554601F066493MSDAREFDSGVVDVADELVQRHGTSGAIDRLQRRRQTSNDELQARCTEAIA
SL_5KL_010_SEDDRAFT_10070336SL_5KL_010_SEDDRAFT_100703362F098192MKCPLRIDSQGNASDCYKNECAWWVADAEIENSVTEGACAVLEVAVNGIFVTIGDDE*
SL_5KL_010_SEDDRAFT_10080260SL_5KL_010_SEDDRAFT_100802602F105255TKLVDKHYSPLVIRKYTHYGFPIYIGLITDNDLSDLDKVVVEFMEENKETHWVNDIQKIRNLAGALTEHLNDHYDRAEGVAVVFYVDKMFISSLHGDFMNHTSCRIEFYSLLTMSTGV*
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