| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000374 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053056 | Gp0053697 | Ga0026668 |
| Sample Name | Marine sediment microbial community from Union City, CA, USA - Pond 1C Sediment 2 |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 214760258 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| All Organisms → Viruses → Predicted Viral | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Salt Pond → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → lagoon → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Eden Landing Ponds, San Francisco, CA, USA | |||||||
| Coordinates | Lat. (o) | 37.569083 | Long. (o) | -122.103267 | Alt. (m) | N/A | Depth (m) | .3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015275 | Metagenome / Metatranscriptome | 256 | Y |
| F038111 | Metagenome | 166 | N |
| F062246 | Metagenome | 131 | Y |
| F078611 | Metagenome | 116 | Y |
| F100426 | Metagenome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| P_1C_Sed_2_UnCtyDRAFT_1005819 | Not Available | 2789 | Open in IMG/M |
| P_1C_Sed_2_UnCtyDRAFT_1020863 | All Organisms → Viruses → Predicted Viral | 1257 | Open in IMG/M |
| P_1C_Sed_2_UnCtyDRAFT_1043920 | Not Available | 785 | Open in IMG/M |
| P_1C_Sed_2_UnCtyDRAFT_1060628 | Not Available | 648 | Open in IMG/M |
| P_1C_Sed_2_UnCtyDRAFT_1064728 | Not Available | 623 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| P_1C_Sed_2_UnCtyDRAFT_1005819 | P_1C_Sed_2_UnCtyDRAFT_10058196 | F078611 | MNNRTTINIDKELREILKSKRKYKRETYDEVLKRILKDKQKMRGMK* |
| P_1C_Sed_2_UnCtyDRAFT_1020863 | P_1C_Sed_2_UnCtyDRAFT_10208632 | F038111 | MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLDLLADLHNSPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRQ* |
| P_1C_Sed_2_UnCtyDRAFT_1043920 | P_1C_Sed_2_UnCtyDRAFT_10439202 | F015275 | MKAEYGFIDPGAIMGVVVSLIILAVGVFAFFVTLSEVSNVTDDENITSAVQNVSDTGNSVFNIIGIVLIIGAIMSIVGLVYNYVR* |
| P_1C_Sed_2_UnCtyDRAFT_1060628 | P_1C_Sed_2_UnCtyDRAFT_10606282 | F100426 | MARNRIIYASQSVWVNGEVLYRVQSLGTTTTFTSEDVFELGHLDIIDVVDDVPAVDVTLNTNDFGDVKTLAVLAQVAPAKIDMDATADASNANLVAGGSTYLHGVALADFAVVCGN |
| P_1C_Sed_2_UnCtyDRAFT_1064728 | P_1C_Sed_2_UnCtyDRAFT_10647282 | F062246 | MYVLHDFKYIFILIVFHMERKLREISGSYVITIPKQVCDLYGYKPNDVFKIEPIGGGELRLRKV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |