| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000371 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053056 | Gp0053696 | Ga0026666 |
| Sample Name | Marine microbial community from Union City, CA, USA - Pond 1C Liquid 3 |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 47212914 |
| Sequencing Scaffolds | 15 |
| Novel Protein Genes | 19 |
| Associated Families | 19 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 2 |
| Not Available | 9 |
| All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage | 2 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → pond → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Eden Landing Ponds, San Francisco, CA, USA | |||||||
| Coordinates | Lat. (o) | 37.5693 | Long. (o) | -122.102517 | Alt. (m) | N/A | Depth (m) | .29 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001293 | Metagenome / Metatranscriptome | 729 | Y |
| F007549 | Metagenome | 349 | Y |
| F008719 | Metagenome / Metatranscriptome | 329 | Y |
| F009989 | Metagenome | 310 | Y |
| F015658 | Metagenome | 253 | N |
| F026806 | Metagenome | 196 | Y |
| F027015 | Metagenome | 196 | Y |
| F030884 | Metagenome / Metatranscriptome | 184 | Y |
| F038111 | Metagenome | 166 | N |
| F046404 | Metagenome / Metatranscriptome | 151 | Y |
| F047500 | Metagenome | 149 | Y |
| F048561 | Metagenome | 148 | Y |
| F049218 | Metagenome / Metatranscriptome | 147 | Y |
| F050952 | Metagenome / Metatranscriptome | 144 | Y |
| F054592 | Metagenome | 139 | Y |
| F054593 | Metagenome | 139 | Y |
| F061556 | Metagenome | 131 | Y |
| F069336 | Metagenome | 124 | N |
| F097996 | Metagenome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| P_1C_Liq_3_UnCtyDRAFT_1000979 | All Organisms → Viruses → Predicted Viral | 3274 | Open in IMG/M |
| P_1C_Liq_3_UnCtyDRAFT_1002853 | All Organisms → Viruses → Predicted Viral | 1565 | Open in IMG/M |
| P_1C_Liq_3_UnCtyDRAFT_1006118 | Not Available | 963 | Open in IMG/M |
| P_1C_Liq_3_UnCtyDRAFT_1006562 | Not Available | 921 | Open in IMG/M |
| P_1C_Liq_3_UnCtyDRAFT_1006984 | Not Available | 887 | Open in IMG/M |
| P_1C_Liq_3_UnCtyDRAFT_1007186 | Not Available | 873 | Open in IMG/M |
| P_1C_Liq_3_UnCtyDRAFT_1007545 | All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage | 848 | Open in IMG/M |
| P_1C_Liq_3_UnCtyDRAFT_1009330 | All Organisms → cellular organisms → Eukaryota | 754 | Open in IMG/M |
| P_1C_Liq_3_UnCtyDRAFT_1012431 | All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage | 643 | Open in IMG/M |
| P_1C_Liq_3_UnCtyDRAFT_1013229 | Not Available | 623 | Open in IMG/M |
| P_1C_Liq_3_UnCtyDRAFT_1014704 | Not Available | 589 | Open in IMG/M |
| P_1C_Liq_3_UnCtyDRAFT_1016646 | Not Available | 552 | Open in IMG/M |
| P_1C_Liq_3_UnCtyDRAFT_1018951 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 517 | Open in IMG/M |
| P_1C_Liq_3_UnCtyDRAFT_1019175 | Not Available | 513 | Open in IMG/M |
| P_1C_Liq_3_UnCtyDRAFT_1019886 | Not Available | 504 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| P_1C_Liq_3_UnCtyDRAFT_1000979 | P_1C_Liq_3_UnCtyDRAFT_10009791 | F008719 | GMTFAWNNIPGANNLGVSVESFSDDALKRQQVAEHIQVKMAYQMKVTGSDLGGFINSAIS |
| P_1C_Liq_3_UnCtyDRAFT_1000979 | P_1C_Liq_3_UnCtyDRAFT_10009792 | F097996 | MAINREGMHPRYLGFQVDWPVFVKIPFTADGKQWKKSEHFNWAERNIDTKDAASLYAQGFIYHNTELNKANKVGDRLSEMNAEDLRSVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWIAEQFYEIRDTILGE* |
| P_1C_Liq_3_UnCtyDRAFT_1002853 | P_1C_Liq_3_UnCtyDRAFT_10028533 | F038111 | MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLNLLANLHNSPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRQ* |
| P_1C_Liq_3_UnCtyDRAFT_1006118 | P_1C_Liq_3_UnCtyDRAFT_10061182 | F061556 | MESLKTYRLATKTKTGDIVQFGPRMSMAIAERKRKAMAALTSYPVYIVNTLAE* |
| P_1C_Liq_3_UnCtyDRAFT_1006562 | P_1C_Liq_3_UnCtyDRAFT_10065622 | F030884 | MKVLKATQEQHSELDGYRNGNSVLQFVKDGNDNWIVGKSVLTDSNFSAIHDKLSELQVIDYVKPKPPRYEVTPI* |
| P_1C_Liq_3_UnCtyDRAFT_1006984 | P_1C_Liq_3_UnCtyDRAFT_10069843 | F007549 | IRQNINYLVVLKLGGTRDINSILRECSVDLTKDELLHMYNEATRDKFNVLIINLDKSGNERYRRNFLDYFVIE* |
| P_1C_Liq_3_UnCtyDRAFT_1007186 | P_1C_Liq_3_UnCtyDRAFT_10071861 | F069336 | NLIYIYIMATHPKNNEYVRKWRLLNREKYLEYDRKHLLKYYYYKKGIKELMNIDPTLFF* |
| P_1C_Liq_3_UnCtyDRAFT_1007294 | P_1C_Liq_3_UnCtyDRAFT_10072941 | F054592 | MLVEVKEINKSKRFEATFSDGSTTKFGQTNPKTGTFIDHKNEKLKTNYIKRH |
| P_1C_Liq_3_UnCtyDRAFT_1007545 | P_1C_Liq_3_UnCtyDRAFT_10075452 | F026806 | IMLNRALYRLFNSLPFKLVNKTFNTLDETTQTTRSQILYKLNLSNFKNANEVEIYPHLSNNNSGLTKTTHMLIYQDYETLSTWSPVESIVIIAPNFPIKSNEVSADVEYVDGFPTVIGEVRHESEILEISTNSPVPAIIYEPKHYRFMSMKQTDSGLRNIMFKIYYRFKNNGSLIPVKANLGGSFSLKLMFRKIN* |
| P_1C_Liq_3_UnCtyDRAFT_1009330 | P_1C_Liq_3_UnCtyDRAFT_10093301 | F048561 | MENFYAKKDVKKYCNKTDNPNYDLHHFDTPFRSLVVAPSGSGKSNFITNLITLFCKGRGTYDNI |
| P_1C_Liq_3_UnCtyDRAFT_1009330 | P_1C_Liq_3_UnCtyDRAFT_10093302 | F015658 | NEKIFDDVIVGTGYGVNNDPYISVGKYLIHKQHLLGGKLQVRSQVNHNQIHGFKSQNVTNNIRDVLLKLHKNEPIGFKDIDKLSEIEKNQLHTIGKKLHITDLFDIPSTLKSQEDKLKDEFILLRGSLLAGNNNPDLLRKFKIVLLKMKNNKLISLQEYNEVLNILLEMEI* |
| P_1C_Liq_3_UnCtyDRAFT_1012431 | P_1C_Liq_3_UnCtyDRAFT_10124311 | F054593 | MSSQSTDNYLYYTALINNDGSILPSSESDVEPDFQFKEDRKVALLPDPEKYMVAVESCMMDLKSLPVFVPTIKHNLNPSNTQKNETIYEITLEYDGYSATTPIYFEPQDQTISQPNFVNGYANYKSGYYNLYNYEFFFTMVNEAIRTAFLSLIDVIKNYNGGSLPTAFSNLSNSSGNYEIPYFIF |
| P_1C_Liq_3_UnCtyDRAFT_1013229 | P_1C_Liq_3_UnCtyDRAFT_10132291 | F009989 | MSSVSDHIQLMKSQENKYDSVFNKREWLSINDTTTQYDQGTSIIETTSLSNNSKFLDYNSGYLSVPLLVTLTSNASAITGIADTGVLPYTKSVGFKQSFLSMINSITVDLNGQPMVQQNQLVDMYNHFRLLTSESWTSQ |
| P_1C_Liq_3_UnCtyDRAFT_1014704 | P_1C_Liq_3_UnCtyDRAFT_10147041 | F047500 | MNITLDLSKGQLSKLRNGHGIRINPTMFGSGVDLIIDPMTYHNMAKKLDKGKGVVIKMGSNEIDMNKMEGTGLFAGAGNKSGKISRIKKARKWRDFSDDTLRKGIDTASYGYKEFQKAKNPISSKVKSWFGAGMEDESESEEEMEGGKISFK |
| P_1C_Liq_3_UnCtyDRAFT_1016646 | P_1C_Liq_3_UnCtyDRAFT_10166461 | F027015 | MNLIFLYLFILYMFHKASTEAERQKLFDDYMLRILKEKEVIKKNKKIIDDQDFIFDPTIDEEKVKGAFNSYVDSLVVKNFLIEQIHTRLKINKNMAMQFVNKLDGNQVLILSKVINEFIKDIQDKYVSINDYILKRSFDELQGTYNVVQQQEKDNEIVRQNQVEQGEVLQE |
| P_1C_Liq_3_UnCtyDRAFT_1018951 | P_1C_Liq_3_UnCtyDRAFT_10189511 | F001293 | LINVQASINPNNEKKIKNEDEISKLIKAFPKDIAALDKRSVLAKVSSQGSGT* |
| P_1C_Liq_3_UnCtyDRAFT_1018951 | P_1C_Liq_3_UnCtyDRAFT_10189512 | F046404 | MNEKMSKRRIEITDLQKQEIEEKLERRLLIRLHIFDLILLINL* |
| P_1C_Liq_3_UnCtyDRAFT_1019175 | P_1C_Liq_3_UnCtyDRAFT_10191751 | F050952 | MQNTTTKTNNVFLTAANAAIAVHVNNTVVATDVQTADALVQVFLTHNI |
| P_1C_Liq_3_UnCtyDRAFT_1019886 | P_1C_Liq_3_UnCtyDRAFT_10198862 | F049218 | MSSIILNSTHIIDKINNSTFQIDFERSVSLFDKHIALTSASLYFSWRNITTSNNKFSYIWIDDIEYYVELPV |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |