| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000366 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063439 | Gp0054160 | Ga0026664 |
| Sample Name | Alkaline soda soil microbial communities from Kulunda Steppe, Russia - 3KL_010_SOIL |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 413268194 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| Not Available | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → saline lake → lake sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Russia: Kulunda Steppe | |||||||
| Coordinates | Lat. (o) | 52.98 | Long. (o) | 82.1 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000388 | Metagenome / Metatranscriptome | 1201 | Y |
| F003605 | Metagenome / Metatranscriptome | 477 | Y |
| F005102 | Metagenome / Metatranscriptome | 412 | Y |
| F087396 | Metagenome / Metatranscriptome | 110 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| SS_3KL_010_SOILDRAFT_10030741 | All Organisms → cellular organisms → Bacteria | 1859 | Open in IMG/M |
| SS_3KL_010_SOILDRAFT_10034952 | Not Available | 1662 | Open in IMG/M |
| SS_3KL_010_SOILDRAFT_10114207 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 628 | Open in IMG/M |
| SS_3KL_010_SOILDRAFT_10157725 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| SS_3KL_010_SOILDRAFT_10030741 | SS_3KL_010_SOILDRAFT_100307413 | F087396 | PADRPACTWHADRPAVLLWEGLQMDEATLRNSPILPYVLMLASLLQRRTIGREELVAALRRSMRQRSIGRWPHREYVLRYLHEHPP* |
| SS_3KL_010_SOILDRAFT_10034952 | SS_3KL_010_SOILDRAFT_100349524 | F005102 | MAVQDRGRYYAQEVTVDQDANVREQIQNALDEGDQHNWHLVGVSDVMAGRTVMLFWDTERPSFGITHKSK* |
| SS_3KL_010_SOILDRAFT_10114207 | SS_3KL_010_SOILDRAFT_101142072 | F003605 | MAVGDDAQSAGIPLVPEVGEEGRTRWGALEINRTRDFIAQVKALLPIGKSGYRAASGITIGTEPPSGGSDGDLYFRYVEQEPTMEPM* |
| SS_3KL_010_SOILDRAFT_10157725 | SS_3KL_010_SOILDRAFT_101577252 | F000388 | MKVIKVTKDYFETEDEKVYFFEPLEKEISVEDIQKIVNANKKLVKELKGAKD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |