| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000335 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063124 | Gp0051934 | Ga0024852 |
| Sample Name | Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 7377467 |
| Sequencing Scaffolds | 19 |
| Novel Protein Genes | 21 |
| Associated Families | 19 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 15 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. | 2 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → active permafrost layer → permafrost |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Bonanza creek, Alaska, USA | |||||||
| Coordinates | Lat. (o) | 64.7 | Long. (o) | -148.3 | Alt. (m) | N/A | Depth (m) | .3 to .7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000817 | Metagenome / Metatranscriptome | 879 | Y |
| F001233 | Metagenome / Metatranscriptome | 741 | Y |
| F001357 | Metagenome / Metatranscriptome | 716 | Y |
| F001719 | Metagenome / Metatranscriptome | 647 | Y |
| F003427 | Metagenome / Metatranscriptome | 487 | Y |
| F006257 | Metagenome / Metatranscriptome | 377 | Y |
| F007739 | Metagenome / Metatranscriptome | 345 | Y |
| F010621 | Metagenome / Metatranscriptome | 301 | Y |
| F011719 | Metagenome / Metatranscriptome | 288 | Y |
| F023129 | Metagenome / Metatranscriptome | 211 | Y |
| F023505 | Metagenome / Metatranscriptome | 209 | Y |
| F033915 | Metagenome / Metatranscriptome | 176 | Y |
| F044777 | Metagenome / Metatranscriptome | 154 | Y |
| F048671 | Metagenome / Metatranscriptome | 148 | Y |
| F049452 | Metagenome / Metatranscriptome | 146 | N |
| F055087 | Metagenome / Metatranscriptome | 139 | Y |
| F060406 | Metagenome / Metatranscriptome | 133 | N |
| F081387 | Metagenome / Metatranscriptome | 114 | Y |
| F090001 | Metagenome / Metatranscriptome | 108 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| actLayA5DRAFT_100118 | Not Available | 669 | Open in IMG/M |
| actLayA5DRAFT_100824 | Not Available | 583 | Open in IMG/M |
| actLayA5DRAFT_101042 | Not Available | 539 | Open in IMG/M |
| actLayA5DRAFT_102421 | Not Available | 753 | Open in IMG/M |
| actLayA5DRAFT_102642 | Not Available | 575 | Open in IMG/M |
| actLayA5DRAFT_103043 | Not Available | 1437 | Open in IMG/M |
| actLayA5DRAFT_103067 | Not Available | 702 | Open in IMG/M |
| actLayA5DRAFT_103964 | Not Available | 578 | Open in IMG/M |
| actLayA5DRAFT_104316 | Not Available | 636 | Open in IMG/M |
| actLayA5DRAFT_104904 | Not Available | 723 | Open in IMG/M |
| actLayA5DRAFT_105409 | Not Available | 577 | Open in IMG/M |
| actLayA5DRAFT_105739 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. | 603 | Open in IMG/M |
| actLayA5DRAFT_106012 | Not Available | 730 | Open in IMG/M |
| actLayA5DRAFT_107413 | Not Available | 651 | Open in IMG/M |
| actLayA5DRAFT_107426 | Not Available | 672 | Open in IMG/M |
| actLayA5DRAFT_108373 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 519 | Open in IMG/M |
| actLayA5DRAFT_108873 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. | 531 | Open in IMG/M |
| actLayA5DRAFT_109155 | Not Available | 595 | Open in IMG/M |
| actLayA5DRAFT_114252 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 651 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| actLayA5DRAFT_100118 | actLayA5DRAFT_1001182 | F007739 | RAAESKIEVVRFKIIPGDWGKVRSGWLTGLLLNRAARLGSGGRIHQFLWHVRTCQTRMRDLAASSD* |
| actLayA5DRAFT_100824 | actLayA5DRAFT_1008241 | F090001 | FQVTRFPALPTAGIHGAEHRNWKRRTLRFSAPRLPVSPTTVSKPQNAPQLSSTRGRSLVTAFPSPATALAFTRSIPGSKVPACYFASSLAASCARSARTSTTGPGLPRSRLPHRFTPVAPPTTRAPDCASRFRSPSGFLRPSGSKRSAELAARRPAFQFARSPFAPRSHFYF* |
| actLayA5DRAFT_101042 | actLayA5DRAFT_1010421 | F000817 | RPKVSRIIPGDWGKVGPGWLARLLLSRIARFGSGGRIHQFL* |
| actLayA5DRAFT_102421 | actLayA5DRAFT_1024211 | F000817 | NEAAVAVERLKLFVSRIIPGDWGKVGSGWLARLLLNRIARCGGGGRIHQFL* |
| actLayA5DRAFT_102642 | actLayA5DRAFT_1026422 | F048671 | MAEILAEAGRITGLGPEIGGKIIFGLQSAYAKRAGQEPMRFVAPASQLTELDDDDLVIVRFSRTDHRTMAGPLPVASLSLA* |
| actLayA5DRAFT_103043 | actLayA5DRAFT_1030432 | F081387 | MSFSWLERLYSHMGAEKHPTVGSSGESWSINESLNQRLAEMIDSMNRENYESCKVWPQIKKMLLHLKRTSGQQRASSCGKTLTRERYWSLLGVKNG* |
| actLayA5DRAFT_103067 | actLayA5DRAFT_1030671 | F010621 | LVWFANRWRNHRYERAKKPYSKFSDRKALNGPATRPQTPLAVENGVGKPAAPQGR |
| actLayA5DRAFT_103964 | actLayA5DRAFT_1039641 | F006257 | VQVIRFPALLSTGMHGTEHRIKKR*VFRRSAPQRPISPPLDQCLPAHRSLSPQRSRPLVAPFPSPATAAPSQKPPFRGRWSRTATSMPPSSLPRPVRLQLPCLHWFAPSDGSFFASDPLRLFSPVRSAASSVSTPLQDFYIPRDQSVQQIPPPHGSPSEPARFPLAPRCRFYF* |
| actLayA5DRAFT_104316 | actLayA5DRAFT_1043161 | F044777 | VTRFPALLFAGMHGIEHRTKKSRALRRSAPLRRDFSAQGSMLPGTLRSLFSMEPVARNGLSLACNGCPLSEASIPGSMVPTCHFATCQLASPPGPPSAPLPSLVCPSRRPLPRFRPVAASLADSFDCFPCLHSPPGLLHPSGSKRSTGSAALRLAFRTRPISSRSPLPVLFLGLAADHRSWLATFP |
| actLayA5DRAFT_104904 | actLayA5DRAFT_1049042 | F060406 | CFRLASTASHSGSTGGRLSRLGSAFCRSARSVANLRFASALRTAVRPLADLPACAGVLPQARPRTNFRLTSDLDPSARLVSNFRFAPVVVATSACAFCCCGLWLAPASARLPYPWRTSDSHRPVLPTGFTGFDSLGLRLASLLPAGLLMHP* |
| actLayA5DRAFT_105409 | actLayA5DRAFT_1054092 | F003427 | MVKTRNYNHKRVFTWFAGRRPQTPAQASLEASLEIQRPQGAGRPCYEAEQTPLAVENGVGKLSALSGA* |
| actLayA5DRAFT_105739 | actLayA5DRAFT_1057392 | F055087 | MTTTAKTITNTAADVQQQYAHSAQTMAKHLAAAQERNVKYTQSMVESTIALLKSHMEDTRSLMEQWGQQGDSQVSETYMSLFRAPFTAYQQMFEGVEAASRQMFEGVETASRQMLEGVEKATKQSSESFEQA |
| actLayA5DRAFT_106012 | actLayA5DRAFT_1060121 | F011719 | GKVGSGWLTQPLSSWIARSGSGGRIHQFLWRRSRAVSKREKGTER*GAIRSRSESSQVAPAGFGPGRIAVTQRVYGCYCASARADDSGGFREEVSQMKDAERRDKVSVRTGKDTRPRQGP*KPSEKSAVLKTVPLTCGQKAT*ELRGETRGTGQTHCQKQWLTRR* |
| actLayA5DRAFT_106945 | actLayA5DRAFT_1069451 | F049452 | LRRRCSAPGICSPFAVFPGLRINALRLAAAFLLLS*TEPVARNGLSLASNSCRLSAASIPGSMFLACYFAPCFSAFLPVRPFCSITFAGSPRSMATSLRLARCSSASKLDWSLPXPPLPFRTFTSLWIEAFSRTRYPSAHLPSTPDFLSLPDAGSISRVGLGSPFLVRYVS |
| actLayA5DRAFT_107413 | actLayA5DRAFT_1074132 | F001719 | MKHIKGVALTVFALGIGVALLAGKDDIRKFHRMRSM* |
| actLayA5DRAFT_107426 | actLayA5DRAFT_1074261 | F023505 | LKGCVGGGRKKVVDIPEIIPGDWGKVESGWLAQPLEARFARNGNRRHNSPVPLPAFARRQ |
| actLayA5DRAFT_108373 | actLayA5DRAFT_1083731 | F001357 | MKRMLLMVLLALALPMAAFASNSVDFTNSGGTLSGSSAGLSLSGSELIAVNGLNGNGLTTGDLGSLTFWTGTMLSGNLQNGGTFNGGGGFQISGNGTNGIPNGVLFNGSFTGPVTWTLVTLANGTHNYTLTGSITGIWMGGATVDGATVQLTINTGKGFFNNST |
| actLayA5DRAFT_108873 | actLayA5DRAFT_1088732 | F055087 | MTTTAKTTANTAADVQEQYANIARTMAKHLAAAQERNVKYTQSIVESTIALLKSHMEDTRSMMELWGQQGDSRVSQSYMNLFSAPFTAYQQMIKGVETTSRQMFEGVETASKQMLEGVEKATKQSFESFEQ |
| actLayA5DRAFT_109155 | actLayA5DRAFT_1091551 | F001233 | LRLNVSRIIPGDWGNVESGWLTQLLSSRIARFGSGGRIHQFLWRRSRAVSNAKRN* |
| actLayA5DRAFT_109155 | actLayA5DRAFT_1091552 | F023129 | VKRRDPWHRANALSKAAADPALIGGDAETKLQTCLYLVAPPA |
| actLayA5DRAFT_114252 | actLayA5DRAFT_1142522 | F033915 | MAVSPTAAYGIYPRNVALPDIVYTLNREGFQNRDICMVLSPAHPVASVVRDARIDHGKWEESAASARTIGWFSEFGAVMIPTVGFFIRSQAFFXALFMDQDFPSLSRQSRTLAGLGFSEDDAKRLGSQLSD |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |