Sample 3300000214

Basic Information
IMG/M Taxon OID	3300000214 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0053652 \| Ga0026166
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 200m
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300000214 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0046785 | Gp0053652 | Ga0026166

Sample Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 200m

Sequencing Status

Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	97968869
Sequencing Scaffolds	22
Novel Protein Genes	25
Associated Families	25

Dataset Contents

Total Genome Size

97968869

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	2
All Organisms → cellular organisms → Archaea	1
Not Available	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio thiocyanodenitrificans	1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon

All Organisms → cellular organisms → Archaea

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio thiocyanodenitrificans

All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → coastal inlet → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Saanich Inlet 54, Vancouver Island, BC, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	N/A	Depth (m)	200
Location on Map

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Location Information

Location

Saanich Inlet 54, Vancouver Island, BC, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

N/A

Depth (m)

200

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004906	Metagenome / Metatranscriptome	419	Y
F011736	Metagenome / Metatranscriptome	287	N
F012582	Metagenome / Metatranscriptome	279	Y
F015796	Metagenome / Metatranscriptome	252	N
F017149	Metagenome / Metatranscriptome	242	Y
F034620	Metagenome	174	Y
F035724	Metagenome	171	Y
F036272	Metagenome	170	Y
F042172	Metagenome	158	Y
F047114	Metagenome	150	N
F051972	Metagenome	143	N
F055790	Metagenome / Metatranscriptome	138	Y
F058066	Metagenome	135	Y
F061273	Metagenome	132	Y
F061863	Metagenome / Metatranscriptome	131	Y
F062150	Metagenome / Metatranscriptome	131	N
F063767	Metagenome	129	N
F067831	Metagenome	125	N
F068482	Metagenome	124	N
F076490	Metagenome / Metatranscriptome	118	Y
F078263	Metagenome / Metatranscriptome	116	N
F080898	Metagenome / Metatranscriptome	114	N
F081435	Metagenome	114	Y
F093903	Metagenome / Metatranscriptome	106	N
F101492	Metagenome / Metatranscriptome	102	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
SI54feb11_200mDRAFT_c1000744	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	10133	Open in IMG/M
SI54feb11_200mDRAFT_c1001917	All Organisms → cellular organisms → Archaea	5810	Open in IMG/M
SI54feb11_200mDRAFT_c1002280	Not Available	5151	Open in IMG/M
SI54feb11_200mDRAFT_c1004360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	3243	Open in IMG/M
SI54feb11_200mDRAFT_c1010329	Not Available	1627	Open in IMG/M
SI54feb11_200mDRAFT_c1012248	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1377	Open in IMG/M
SI54feb11_200mDRAFT_c1012750	All Organisms → Viruses → Predicted Viral	1329	Open in IMG/M
SI54feb11_200mDRAFT_c1014925	Not Available	1146	Open in IMG/M
SI54feb11_200mDRAFT_c1016424	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
SI54feb11_200mDRAFT_c1020160	Not Available	852	Open in IMG/M
SI54feb11_200mDRAFT_c1021289	Not Available	810	Open in IMG/M
SI54feb11_200mDRAFT_c1021413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	806	Open in IMG/M
SI54feb11_200mDRAFT_c1025238	Not Available	694	Open in IMG/M
SI54feb11_200mDRAFT_c1025836	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua	679	Open in IMG/M
SI54feb11_200mDRAFT_c1027414	Not Available	644	Open in IMG/M
SI54feb11_200mDRAFT_c1028766	Not Available	617	Open in IMG/M
SI54feb11_200mDRAFT_c1029802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio thiocyanodenitrificans	600	Open in IMG/M
SI54feb11_200mDRAFT_c1030757	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
SI54feb11_200mDRAFT_c1031016	Not Available	580	Open in IMG/M
SI54feb11_200mDRAFT_c1031540	Not Available	572	Open in IMG/M
SI54feb11_200mDRAFT_c1031762	Not Available	569	Open in IMG/M
SI54feb11_200mDRAFT_c1032217	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	563	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
SI54feb11_200mDRAFT_c1000744	SI54feb11_200mDRAFT_10007441	F062150	ILFSYVKSDDSKWFATFFWGPTWNDEKIYIEELFYKPYSVANGGKFNIGFGQQLVPFGSNLPYLDLTRRDMFTYQTSWDVGELVLGRGVSVYGALGEKGYLETYFGDNLNNRWSDYASARVSYEIANQFVALSVDNQERQSIDVSGLNDKIEYIAEYSLSDEYYFARAVIKPGLYGFNLLAGYESFPDKEAKPLYGVMWTFDGDYPGSFLSVEFGNEGDLLFKINADLGILKLGDSKNE*
SI54feb11_200mDRAFT_c1001917	SI54feb11_200mDRAFT_10019171	F067831	MKLNYFNFNNYSSSIATQSLQAAAPFLTGSNPEYWTGKGNNHGVIAGYDWVPSSGSLKLLELNTNIQTPPETNFLDSAVTWWKANNYDTIVLVTRNEEGTVIPSLNLVGDITASLDIDGFTSSIYVQPSYPTPVPDFDVPNTTFVLRFGFDSASPIDYLASDKREFRNFASSSGIESLMPRKMADLPDGFSNGVGVPDVLIKDPTVDYQTLLMNSFQFYDITDDNKNYLLSQSYCEEFILPDLNYNGAYYSEVRGIMMLTPQENIFLQPRNPITADVNVFQTQLPCYILSADSGSYTTTTITRK
SI54feb11_200mDRAFT_c1001917	SI54feb11_200mDRAFT_100191710	F034620	YFFLSKRKFFDIYDIDWRYGDTNHGATIYCLENDLKYLHLGPYYDNPNWETEDTLHTYFYKDKPFLTHLKGGFSENKMSSKDFEEEFNKYLQELKNAN*
SI54feb11_200mDRAFT_c1002280	SI54feb11_200mDRAFT_10022803	F051972	MXSPIYYFTRSGCAWCTRMQPSIEHINKTLNDEQKIQILNVDDKKSRVIYDTILTSNKLRAITPMLYNSNIGTFLLGYQDKRNVEQFLKANPLKERKPLKPIPTFDIQNSSKKDFDNWKKSVILWYGENQKDLPSNVISQERMIDMVYTQFMAYRTKPLTIEDRLSKLEEQSHEPQNYREECKMMNKELKILKLQIKKLKRLK*
SI54feb11_200mDRAFT_c1004360	SI54feb11_200mDRAFT_10043601	F080898	KPTHEEAKSFLKMEGHENLSSQLPLFNNLPMDVIIHQENSDLFKTIISEFEKGKDLELMSIQPKWLSGDFPMIIGLFQKWLYDIFLFKMTSNFHFFESKKDNIKKLSDAADISKLLKLVKSANKIKLISNKPINKDITFDTLMVEYRNVFK*
SI54feb11_200mDRAFT_c1010329	SI54feb11_200mDRAFT_10103292	F063767	ELEWKQDGCCKLLEDDNTGCSLGDDRPVFCKLYPLVENKSNRLVMNNWGYLHCPKSQHYELDKIVEGKYHYKLKPKVRKHNKREELILDDEIDNVVHQIWLQSKDSIIQRYGQEYYNRIKNEMKQTIKHEFF*
SI54feb11_200mDRAFT_c1012248	SI54feb11_200mDRAFT_10122485	F012582	MTDFHKKLKHLSATMLHWAEENKIRTKRNGNYEIPQRNGIDWKFDFKFVTKLDSMLADGLDNKLNKKEMEM
SI54feb11_200mDRAFT_c1012750	SI54feb11_200mDRAFT_10127503	F076490	MTRVNYETLGKLIDIDEKDLEFERVTNSIDVVDREYGVEVIFDYYRRHGFPHYKIREDEKHEHMRKLKKFDVDTIFIDNQIVQTMHCLRL
SI54feb11_200mDRAFT_c1014229	SI54feb11_200mDRAFT_10142291	F101492	MFKTAAELGREFRSEIIPMLKSKGFDLKIASSRKSYYHDGKLGVKITKVPTNFPVWVSKYSRWDRTKNADRLLATIEDRINILISNNNVKLETKGDGGLDIRVDVEFGQS
SI54feb11_200mDRAFT_c1014925	SI54feb11_200mDRAFT_10149252	F017149	SEEASYLYNGGFPRNVTDNKQFDGWKQGNEKYKSAKDVVGYWNFDNVVGDMVIDKSGNDNHAKIHGALQKEKELRIGSLALIPNRRDGKFTCLEHEENGWSQTKFTHWETRENQLRFFNKVRRGLSSIKEDGLSSLKYEISHNEEFLDKHEFISVI*
SI54feb11_200mDRAFT_c1016424	SI54feb11_200mDRAFT_10164241	F068482	LQDGHEQLNLKMYFLVQNTLGGPINLSVWRHQKANDICRTRFMDSISQLTLDEETRNSINCLHYKNSCFLYGDIPFKDQKIENDDIVVFTDQTDKEIIIGVIEASSDFQKERGENGR*
SI54feb11_200mDRAFT_c1020160	SI54feb11_200mDRAFT_10201601	F004906	MATKTEKKTDARDTLDSNEGNELSAIAVKSLTNLEEKVEAIDWKLWEIYNIVKNYVESNPGGVSAPQVAQPQASASDIASEIAKALGSTQ
SI54feb11_200mDRAFT_c1020160	SI54feb11_200mDRAFT_10201602	F036272	GELIEYLNKPYYIGAGDPNLSVWRNFHKGQIAEVGLWSDTLKDYEMELIFQKGIINNKGEYSTSKLPVGVWDFKGGYDNITFDISGNNNHAKFYNVGFANKSLKSNTERYLPYRRNGAYGYISSEEQYLNLENLTRTEHPEIMTNRNTFNKKVRLNMSGIDKDGLSSTKFRIVNRKDYQGKHEIIEVVI*
SI54feb11_200mDRAFT_c1021289	SI54feb11_200mDRAFT_10212891	F055790	GIEIGKMEGFELPNFMKNGQLGYNHNAAGFGDSY*
SI54feb11_200mDRAFT_c1021413	SI54feb11_200mDRAFT_10214132	F093903	MRLIPLGIITFLLGGCFFQPVEDFVDQMDDQYFADEFNYIPTEIKPYDKKASMELIWENKVGDNEVNNFNLVFSEEFVIAATSDGSVRKMKINSGETVWKKEFSQ
SI54feb11_200mDRAFT_c1025238	SI54feb11_200mDRAFT_10252381	F047114	TYTWSDFSIAYELSLIGEVGGRYKRQDIYADLFKDRAKKKKVIELIMKVKSNKIKQTVEIPLNTQIVLSDIDMVIQEVLNKPMVNINVA*
SI54feb11_200mDRAFT_c1025836	SI54feb11_200mDRAFT_10258361	F078263	FLFRYSRRYFGMELLHDSDELVGSLDCQLKRLEEKIDTSQPIALLKDLHRQDDEIRHFKNVETTMNTVASSVKELDGTIRKLEERTGSKFTEMTSQIKVTEAMVADKHKGLISKINNINSRIDNLEKKIDFAVRELKSETRKTSFL
SI54feb11_200mDRAFT_c1027414	SI54feb11_200mDRAFT_10274142	F035724	VFNNNPESPYEREVIKHNSSVQMEDGSMFIYSRSVTNYRYSISVVLTSESERDALESFYDSTVNGAEKTFEYTDPYGDVYTVRFDESMRISEIFKDRLYRATFTLLQTA*
SI54feb11_200mDRAFT_c1028766	SI54feb11_200mDRAFT_10287662	F081435	ELKKNEFWLKLHEQDRVDYQKKLEQAETFGDISEIVDDEGNVIQVNKTTPMRNSVNTFLAFEDPDTGLNYERPDQYVSVNKKSYMYHGGEIRDKVLDREIKELI*
SI54feb11_200mDRAFT_c1029802	SI54feb11_200mDRAFT_10298021	F011736	MTPGDNKQFENIYQDWEVDKFENIVRYSTHGRVVHGHRFGWIKKAGNCDFDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
SI54feb11_200mDRAFT_c1030757	SI54feb11_200mDRAFT_10307571	F042172	KRDFLNKKIPLIVIKNIGSELKGASPEIILEKIILNVDDDLEDIFDFTTLKTDIKKNINRLLDKLSGEKKDNSGKEKIDHQKVINNLKDLF*
SI54feb11_200mDRAFT_c1031016	SI54feb11_200mDRAFT_10310161	F058066	FKKKDGFDKDGIPTDEANVLAAQRWDNVLNEIIYGLKCAKKLQDMDYDYKDKEEAKKLTKSSRRSFDLIGEHLFDLWN*
SI54feb11_200mDRAFT_c1031540	SI54feb11_200mDRAFT_10315401	F061863	KIKIYIYIIKMKIDTNLLIQTSIAACLVIFGVVTKNSFEQLGFPNHPIGKPLGMGMFIMGWIYTAYIFSINKPNKLAFILPSIGIVIAVMMMKQYMVKKQTPPMVFPVIFALSWIILGLNAGNHLSGNQKYLGLFASFLVLLSMMQILPYQRTHNIVDGPGQPLFVIAWGILIMLNSNR*
SI54feb11_200mDRAFT_c1031762	SI54feb11_200mDRAFT_10317622	F061273	MAQQDKAQTNGKDQKILQHDIQEIDKKVEEVQQLETANKDQIVASKSFIYVIIAL
SI54feb11_200mDRAFT_c1032217	SI54feb11_200mDRAFT_10322172	F015796	INRVSVQMNKQQMLKYDDVRDRILIREWFKLKGVVLEHGSKYGVDLKGKEYDVEISHLSFDSLWEQWKKENRFRIEIRKRNHYWNGIYNKTHTTHFVQMNKSGHELLVYPEDLIMEYSNNEVELEYLRGFNLKERTFMFIPFDIGKDVIKRYEI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000214: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 200m

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences