NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000207

3300000207: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 10m



Overview

Basic Information
IMG/M Taxon OID3300000207 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046785 | Gp0053395 | Ga0026122
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 10m
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size58467364
Sequencing Scaffolds36
Novel Protein Genes41
Associated Families41

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae1
All Organisms → Viruses → Predicted Viral2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
Not Available23
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomecoastal inletsea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSaanich Inlet 48, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)N/ADepth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001156Metagenome / Metatranscriptome763Y
F003027Metagenome / Metatranscriptome512Y
F003769Metagenome / Metatranscriptome469Y
F009681Metagenome314N
F010947Metagenome297Y
F012717Metagenome / Metatranscriptome278Y
F013232Metagenome / Metatranscriptome273Y
F014506Metagenome / Metatranscriptome262Y
F014789Metagenome / Metatranscriptome260Y
F016995Metagenome243Y
F017640Metagenome / Metatranscriptome239Y
F019557Metagenome229N
F022632Metagenome / Metatranscriptome213N
F023213Metagenome211Y
F025861Metagenome / Metatranscriptome200N
F028941Metagenome190N
F031924Metagenome / Metatranscriptome181Y
F033598Metagenome / Metatranscriptome177N
F036232Metagenome / Metatranscriptome170Y
F039348Metagenome164Y
F041443Metagenome160Y
F048330Metagenome / Metatranscriptome148Y
F049597Metagenome146Y
F052204Metagenome / Metatranscriptome143Y
F052534Metagenome142N
F054088Metagenome140Y
F060125Metagenome / Metatranscriptome133Y
F065792Metagenome / Metatranscriptome127N
F070096Metagenome / Metatranscriptome123Y
F074021Metagenome120N
F078711Metagenome / Metatranscriptome116N
F078811Metagenome / Metatranscriptome116N
F081544Metagenome114Y
F089505Metagenome / Metatranscriptome109N
F090872Metagenome / Metatranscriptome108N
F091332Metagenome107N
F091853Metagenome107N
F097266Metagenome / Metatranscriptome104N
F097380Metagenome / Metatranscriptome104N
F101904Metagenome102N
F103560Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
SI48aug10_10mDRAFT_c1001574All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3054Open in IMG/M
SI48aug10_10mDRAFT_c1001654All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2954Open in IMG/M
SI48aug10_10mDRAFT_c1002099All Organisms → cellular organisms → Bacteria2483Open in IMG/M
SI48aug10_10mDRAFT_c1002597All Organisms → cellular organisms → Bacteria2107Open in IMG/M
SI48aug10_10mDRAFT_c1004050All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia1530Open in IMG/M
SI48aug10_10mDRAFT_c1004344All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae1450Open in IMG/M
SI48aug10_10mDRAFT_c1004482All Organisms → Viruses → Predicted Viral1418Open in IMG/M
SI48aug10_10mDRAFT_c1005426All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1253Open in IMG/M
SI48aug10_10mDRAFT_c1007087All Organisms → Viruses → Predicted Viral1051Open in IMG/M
SI48aug10_10mDRAFT_c1007555Not Available1008Open in IMG/M
SI48aug10_10mDRAFT_c1007759Not Available992Open in IMG/M
SI48aug10_10mDRAFT_c1007876Not Available982Open in IMG/M
SI48aug10_10mDRAFT_c1008193Not Available956Open in IMG/M
SI48aug10_10mDRAFT_c1008286Not Available949Open in IMG/M
SI48aug10_10mDRAFT_c1012051Not Available757Open in IMG/M
SI48aug10_10mDRAFT_c1012253All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium750Open in IMG/M
SI48aug10_10mDRAFT_c1012683Not Available736Open in IMG/M
SI48aug10_10mDRAFT_c1012732Not Available734Open in IMG/M
SI48aug10_10mDRAFT_c1012865Not Available730Open in IMG/M
SI48aug10_10mDRAFT_c1013024Not Available725Open in IMG/M
SI48aug10_10mDRAFT_c1014725Not Available676Open in IMG/M
SI48aug10_10mDRAFT_c1015109All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium666Open in IMG/M
SI48aug10_10mDRAFT_c1015858All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes648Open in IMG/M
SI48aug10_10mDRAFT_c1016740Not Available628Open in IMG/M
SI48aug10_10mDRAFT_c1018134Not Available600Open in IMG/M
SI48aug10_10mDRAFT_c1018175Not Available599Open in IMG/M
SI48aug10_10mDRAFT_c1018376Not Available595Open in IMG/M
SI48aug10_10mDRAFT_c1019269Not Available579Open in IMG/M
SI48aug10_10mDRAFT_c1019420Not Available576Open in IMG/M
SI48aug10_10mDRAFT_c1019527Not Available574Open in IMG/M
SI48aug10_10mDRAFT_c1022171Not Available534Open in IMG/M
SI48aug10_10mDRAFT_c1022889All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon525Open in IMG/M
SI48aug10_10mDRAFT_c1023596Not Available516Open in IMG/M
SI48aug10_10mDRAFT_c1023792Not Available514Open in IMG/M
SI48aug10_10mDRAFT_c1023793Not Available514Open in IMG/M
SI48aug10_10mDRAFT_c1024875Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
SI48aug10_10mDRAFT_c1001574SI48aug10_10mDRAFT_10015749F060125MRLENDNTGKWWEIMLGWKWPHQGFTLGYDIVQPDEQHEENELIFITLLFYLGPLSIIYSWGNYNWSKDNE*
SI48aug10_10mDRAFT_c1001654SI48aug10_10mDRAFT_10016541F009681YSRLYIDAHLCRPQCGDLGQVNSETGKGIVYLAAFRGPWIAAIFLQSKGYEIITDETCNQCGDRVKIIRNLSKLEKRRCRDCDDYFFIETVSWSTRSFTIIDNELERDRYYYQCPSHYGKQDKTTMFL*
SI48aug10_10mDRAFT_c1002099SI48aug10_10mDRAFT_10020992F052204MDNYTETNVRIDFSRGIEFTPTVVFEGDEVESKIFSNKTHQIEELIEYITYHENGGCDVFI*
SI48aug10_10mDRAFT_c1002597SI48aug10_10mDRAFT_10025974F070096MKKLLLILLFIPGLILGQLTSSTDGVDIDLVYSGTTTDANKSLANVQVNDTIVIKLNLSNLSSNTITYVHVDVQYNTNAWARVGYEFDVPTGAQTSNNNWSGNGMKWTVNSNYDANDLWAQWSTQGGSYTQVAGWEVDHVEAVSTSGITGNYATLKFLAKDAGDNHSYTDNIVFTMARITDNTGTAEYVFPVGKVRGYDNMSISHEPLEDLDSNIYVKADFNSNFDVTKVGVVVQKNGTPVS
SI48aug10_10mDRAFT_c1004050SI48aug10_10mDRAFT_10040503F048330VLVDNSIEISNISITARDLIDTYHLMTLILQYSDS*
SI48aug10_10mDRAFT_c1004344SI48aug10_10mDRAFT_10043442F016995MLQKNINIESSAREKRIIKRLNLKNLPFETSLEEFCSKYIEMISDLKESFILGSDKPGMQWCLSTIKKFKVFLLIFEANELGIEVYKESISSKLPEYSYKTIAQIIDEGLEKGFFIKMXARIQKKHDLKIRNIRPSEDLTVEFINSNINMISSFMKFLGKHK*
SI48aug10_10mDRAFT_c1004482SI48aug10_10mDRAFT_10044821F014789MLETLKKEYLGMGYQVEYEKYGLKGIIEGLTITEKMHFVDWEDACDWAGRVTMNPSVPYVILEMRGQE
SI48aug10_10mDRAFT_c1005426SI48aug10_10mDRAFT_10054263F081544MAVYAMALKESKNSNGIVFKTNAPSLEEAREFFRKLKQMSKEDFSELFIVTKVKN*
SI48aug10_10mDRAFT_c1007087SI48aug10_10mDRAFT_10070873F003769MQQLKTLTVKTSNKVKSVHMETLYAVIENCYNSLQVIESDCTASNYFCASANIFAQLQYLYAENGCNDYVSLESVMDVFANNVTYYDEEYSLYESVVENTAMQKIKLQDYACLSN*
SI48aug10_10mDRAFT_c1007555SI48aug10_10mDRAFT_10075552F090872IKSISNRGFDDDVKSKLLQKGYTADSFKVGDKAISYIVDKISDSEAKEFIDYTPKSFSSAPDRGNFSTVTGLSQGLVQDLINIEPGADAGGSAIGKGELFLALAFNDIDNRGGGGDLNFDGKNLEVKGTGGRLGQQGGRGSDFDYLGFLGDKYLEGEELDEFLNDNRNKLINYSIKEIFDAVDGDKSAVIKDIQKALDGVYFNKGLAKXYFNGPADFKDLAEMKIKLTKLNAEAYAQKTNVGAFIFMNSKTGEYVYVDVDNLNDSIDSGLFGTIVKDKIKGYQWNNPHPNMIIR*
SI48aug10_10mDRAFT_c1007759SI48aug10_10mDRAFT_10077592F097380MTVHPDKKVREVLFSMFPLSYRIKKVPVATEVMDRKLFIDSIKTLLEIEDRKDFMLEEIGIDITAYEDLFFRVIENLFKIAFSNSQTELIQDYIYSLKPDKEWDGYVSVNLTGEEEKLVDIKTPEKLWQLLQKVK*
SI48aug10_10mDRAFT_c1007876SI48aug10_10mDRAFT_10078762F089505MTYSELKSLGLDLTQLKQLKRNVSMLIEDIAVDNVQSMRVGSKVTINHPKAPGTWTINKINRKTVIVEQDGRQVKSSMSLLIAA*
SI48aug10_10mDRAFT_c1008134SI48aug10_10mDRAFT_10081341F097266IKLNLSNLSSNTITYVHIDVQYNTNAWARVGYEFNVPTGAQTSNGNWSGNGMKWTVNPNYDANDLWAQWSTQGGSYTQVAGWEVDHVEAVSTSGITGNYATLKFLAKDAGDNHSYTDNIVFTMARITDNTGTAEYVFPVGKVRGYDNMSISHEPLEDLDSNIYVKADFNSNFDVTKVGIVVQKNGTPVSNNLYFDSGGQINITEYVLTSTDNYTLDFVTSYSATQWESLMDNVITLSDVTLTLNELGQYGHGNAGNVFDYGWQFTAVDSDENRDLTPQDAYNLLGHVMGAIDIIPDDGTGIFNNTFHPVKKADWNGWSI
SI48aug10_10mDRAFT_c1008193SI48aug10_10mDRAFT_10081932F033598LAPLDIASRLRAPLPANRSIIVLSTISNWSQLKRVSLVLPRVGRRPXASGKLNFLPLRFPAIILKVLSLIGLK*
SI48aug10_10mDRAFT_c1008286SI48aug10_10mDRAFT_10082861F013232AKSGVPMWWKPGIAFLKQDWINHPHLKHFRNKKSTDSKCDCSSPKLVELWEHDSCVRGRIDTTVCVKCNEVESLSIVR*
SI48aug10_10mDRAFT_c1012051SI48aug10_10mDRAFT_10120511F017640MYHFVTSSKDSTIYLQQPSQNTGLDEIIEVSKTFYGNLKDNARALIKFDTTPLSQSIA
SI48aug10_10mDRAFT_c1012253SI48aug10_10mDRAFT_10122533F049597EQYESTEENLVQDLKKSLEDTINETKYILDDLKQTVEKTIQDQTISDSTKKIVDSVNSDIKNSIEEKHREIINTIKTAKAINNFEEE*
SI48aug10_10mDRAFT_c1012683SI48aug10_10mDRAFT_10126832F022632MKKLLILXXFISCSDTIYXERPIQEVPETLFMPQAVGLKLESYIVEDKVRINTKLPRDGKYRIKILDFSNTIISQEIITGKEGDNILNIYVNSMPVSSYTVELYTNTNDFIGRQTFSMK*
SI48aug10_10mDRAFT_c1012732SI48aug10_10mDRAFT_10127323F039348VSGTISVARGRKMKEVSLTEILHTLDIWWAEANNDHNDGYVQKDYKDRLTAIRKSLQQKSPPVNFEDTKEEMCF*
SI48aug10_10mDRAFT_c1012865SI48aug10_10mDRAFT_10128652F078711MSSGNNVQYLGILEGATLIFVCIFTSRTCISFTQRLSRGISIICLIGILYFASFWLLLISSELLHDHIEWFSFFEPDRVVILYSFTWLLPQTAKSLLIFLMGYREDDDSFEHSMTRILNSLNEERKYFNQLRKELNMGGGQLRRNLDR
SI48aug10_10mDRAFT_c1013024SI48aug10_10mDRAFT_10130243F091853MERHQLRFFLTQCEYKWSHAHKSMEDLWVRRELGEELSKYIATKGYDLVLIRSNSQTMPEDIYCRCDIYVDIPDDKQATLFALKYNKALPLKRGQRDNEYW*
SI48aug10_10mDRAFT_c1014725SI48aug10_10mDRAFT_10147251F078811IILENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSNVDGETMRLSDINGTKSSQNHRINFAFPTEVTKSA*
SI48aug10_10mDRAFT_c1015109SI48aug10_10mDRAFT_10151092F003027MKTAKGNDKLGKENCIVVSRPVGDTCPPSCEFLGNGCYAEQLEKIYPGVRPAGMQNLITEKNKIRAMLINAEKKGNDLRWHERGDFFKDGKELDNEYVDNIIWACESILSEGGKLPKMWAYTHIYDTKLSMVLGKYITMYASIHNEDDWAVAKAAGFELFAWCDSSENIAPKRPRSKKK
SI48aug10_10mDRAFT_c1015858SI48aug10_10mDRAFT_10158582F023213MPFKVGDMLKYHHPSSADEENEQMDLYHFGKDHLDGKLALVLEKSLPAADGTIDYLCYIDESKMWLDGEFLREVKDGNKKSNI*
SI48aug10_10mDRAFT_c1016740SI48aug10_10mDRAFT_10167402F001156KPKDRSRQILERIVGTKSKATLAEAFKMAFAEKYDVKRDEIKQGIVDKVYNNEKVDK*
SI48aug10_10mDRAFT_c1018134SI48aug10_10mDRAFT_10181341F036232GLNAMVYSNFQQFMLTANFSKVHANKEGRINRVYSASLGGMKMFTTYMGMMNHSIVWLGEKGSVKGLAFGTTLTSVDVDVRQGLIYYDNVLLGNSLTGFYTKSFNFNRLTISPMLAVSSPFMQFDMHQHTTVWNPDVMIIGGSNFTYKLTQRFGLNVGINIIEATIPEFPTLKTFTIGSRLSF*
SI48aug10_10mDRAFT_c1018175SI48aug10_10mDRAFT_10181752F010947MRKDIKKILNPALVEKWNKNKNGDLNGIKFNKGDLVSRADCDGESLGIVLEQDGVMATVQWTKQPEDVRLQRRTFVSSLKLMSGVDK*
SI48aug10_10mDRAFT_c1018376SI48aug10_10mDRAFT_10183761F019557MTKYIDMAMKIASLAVIPLLGWVISLEVANAERDFQLQVLYNKVDNLEKVNTAVQEYAVRLGQVDQKLESMEDTVDEIRQDIKDLLRR
SI48aug10_10mDRAFT_c1018376SI48aug10_10mDRAFT_10183762F041443KMKEKKKLRRGMRVKLKTGQTVIILDDPPAIIGNKNTKLLHGPIILEDYVYVISPDYPNKVLMEKIDDIDY*
SI48aug10_10mDRAFT_c1019269SI48aug10_10mDRAFT_10192691F012717NIKDKCHDFFYSSALTHAISLEIASSTYADKCLSYEMLCKRIPSKLGCRSTIYSTLNIAVSKGFFIKQYSKKDRRVRSYCLSEEYSLMLTQWYLDQKKYFSN*
SI48aug10_10mDRAFT_c1019420SI48aug10_10mDRAFT_10194201F014506KKEKKKKFMPIVLKADVMSMQALTRDYNQVLAIGASQASIYGDISNTANLQIYDNLKQVGLSLGRSKVSLNENYQVTWVDAVNVSYMRNYKMNSTTLSVSRMKPMGKWGTVGVGINYSYMFGKDAFGETLPKMGSLGYNVLYTNMVKINDRIMYTPALIGAQNPYSYTQKTDKFDAFGTVSNDFIGILANS
SI48aug10_10mDRAFT_c1019527SI48aug10_10mDRAFT_10195271F052534ATLCTTXNTLFVHNNKTVKKAAFVYTQNAQKVVRNLNAQQQAAFNNLPATYMQNAKQFLINKLAQSTILKS*
SI48aug10_10mDRAFT_c1019527SI48aug10_10mDRAFT_10195272F054088MQQLKTITKTTTTKTKSVHVNTLYTIIENCFNNLQVLESDCTAANYFCASANIFAQLQVLYANTASCNNNNYVSLESIMQVFANNITYY
SI48aug10_10mDRAFT_c1019828SI48aug10_10mDRAFT_10198281F074021MKLFFENWRKHLSEDKNTAQVLREVDEEELGHIQTALEEMEPTDLA
SI48aug10_10mDRAFT_c1022171SI48aug10_10mDRAFT_10221711F065792PSVRVSSATTATTPELTDNQLIDANANFITTYNADGSILNEGVSRGMVVYNMFATIASSTNSPLVATIVEVVNNTTLLLSANIFPFAGGTAVSAYKIYDANDIASPGAQIYVGVAGNLYVETIDGDLVFIEDVPVGEVLPVVVQKVLVGAAAAGGQPNTLTTAGKLTAFI*
SI48aug10_10mDRAFT_c1022889SI48aug10_10mDRAFT_10228891F091332FPGTPDYSESHNKIYGSRSARSRFNNLRTDKILYRNYVLSTNNLLSESVTNDLVDSQTDILFLRMRTPELDEICWNWSQELLLHRDYLRSVGIDLPIENDNRKIIQAEMMVRSGYLHKIWHNSLYAMSELGMEIPNWCKILPYNPLVNAFHGTNRDDEDIGERLLSILEEKYPE
SI48aug10_10mDRAFT_c1023596SI48aug10_10mDRAFT_10235961F101904MRNLQVHYTYKTKNATVQDHCIVQSKTTRFSKTQQLNTQLKLATQLNLKHFYAVTLTHYSVV*
SI48aug10_10mDRAFT_c1023596SI48aug10_10mDRAFT_10235962F103560MPXFGFTVINYNTLLIVNCTTQEQRYANNVTLPSLYAVTQKQLAKLFKTAR*
SI48aug10_10mDRAFT_c1023792SI48aug10_10mDRAFT_10237922F025861MLKNIIILVVIIIGGYMVYTNYMQNEEIAALDGVVNEEHPGELNPDDVV
SI48aug10_10mDRAFT_c1023793SI48aug10_10mDRAFT_10237931F031924DRGPNDLERRIDEQDKTIAHLKRDNKTLAKEVSDLIEEKKQMLDNRS*
SI48aug10_10mDRAFT_c1024875SI48aug10_10mDRAFT_10248751F028941MNPNCIDITNLTSDQLDTLFNDLTTGKKTFKQAVAENPAPFSVIIEDEEKEQKDVKKL*

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