NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000196

3300000196: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 2000m



Overview

Basic Information
IMG/M Taxon OID3300000196 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046785 | Gp0053642 | Ga0026211
Sample NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 2000m
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size48511828
Sequencing Scaffolds23
Novel Protein Genes25
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus6
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1
Not Available9
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine aphotic zone → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationP16, Pacific Ocean
CoordinatesLat. (o)49.283333Long. (o)-134.666667Alt. (m)N/ADepth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001048Metagenome / Metatranscriptome793Y
F006146Metagenome / Metatranscriptome380Y
F008912Metagenome / Metatranscriptome326Y
F013899Metagenome / Metatranscriptome267Y
F015350Metagenome255Y
F018452Metagenome235Y
F025055Metagenome203Y
F027203Metagenome195Y
F031535Metagenome182N
F034336Metagenome / Metatranscriptome175N
F037770Metagenome167Y
F040684Metagenome / Metatranscriptome161N
F052659Metagenome / Metatranscriptome142N
F060128Metagenome / Metatranscriptome133Y
F062844Metagenome130N
F066858Metagenome / Metatranscriptome126N
F074984Metagenome / Metatranscriptome119N
F076187Metagenome118Y
F078841Metagenome / Metatranscriptome116N
F080505Metagenome115Y
F095618Metagenome / Metatranscriptome105Y
F101330Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
LPaug09P162000mDRAFT_c1001594All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus2691Open in IMG/M
LPaug09P162000mDRAFT_c1001757All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus2560Open in IMG/M
LPaug09P162000mDRAFT_c1002358All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota2198Open in IMG/M
LPaug09P162000mDRAFT_c1002480All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2140Open in IMG/M
LPaug09P162000mDRAFT_c1003724All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus1695Open in IMG/M
LPaug09P162000mDRAFT_c1003756All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus1689Open in IMG/M
LPaug09P162000mDRAFT_c1003963All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1639Open in IMG/M
LPaug09P162000mDRAFT_c1004679Not Available1469Open in IMG/M
LPaug09P162000mDRAFT_c1004778All Organisms → cellular organisms → Archaea1451Open in IMG/M
LPaug09P162000mDRAFT_c1005206All Organisms → cellular organisms → Bacteria1375Open in IMG/M
LPaug09P162000mDRAFT_c1009251All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus939Open in IMG/M
LPaug09P162000mDRAFT_c1011074All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus835Open in IMG/M
LPaug09P162000mDRAFT_c1012031All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote790Open in IMG/M
LPaug09P162000mDRAFT_c1012329Not Available778Open in IMG/M
LPaug09P162000mDRAFT_c1012472Not Available771Open in IMG/M
LPaug09P162000mDRAFT_c1012626Not Available765Open in IMG/M
LPaug09P162000mDRAFT_c1016464Not Available643Open in IMG/M
LPaug09P162000mDRAFT_c1016927Not Available631Open in IMG/M
LPaug09P162000mDRAFT_c1017329All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote623Open in IMG/M
LPaug09P162000mDRAFT_c1018630Not Available594Open in IMG/M
LPaug09P162000mDRAFT_c1020893Not Available551Open in IMG/M
LPaug09P162000mDRAFT_c1022400All Organisms → cellular organisms → Bacteria527Open in IMG/M
LPaug09P162000mDRAFT_c1023797Not Available508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
LPaug09P162000mDRAFT_c1001524LPaug09P162000mDRAFT_10015241F066858SKRRDTSMGFSSIFLLRNMYDAEEIRISANKILKMSGDISEDTNAPSIVPGTAIKPSFQPSESSIRFCLAYMVVDATELLNTANRLLLTANVGENPANVNTGTIIIPPPRPIIDPNIPAINPSGINQSSSSMLYRY*
LPaug09P162000mDRAFT_c1001594LPaug09P162000mDRAFT_10015941F027203SQGSLLNDFVTTAPAPAWYRRSKTSSDIPKMPEARIVGLSSVSVPIEVESVGFTLNIFSPFSYNS*
LPaug09P162000mDRAFT_c1001757LPaug09P162000mDRAFT_10017571F062844SLCAEAANGKATIPVTSAKSRMIFLVTIFDFTDK*
LPaug09P162000mDRAFT_c1002358LPaug09P162000mDRAFT_10023588F076187LVSVAITHFFEFISTEKFFENFKISRNIKSFPKTPLIPDTDIFIASNLDTLFIKL*
LPaug09P162000mDRAFT_c1002480LPaug09P162000mDRAFT_10024802F052659MLLSGNPGTETRSAVFIXGRLISSIPELNYQTIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVILWAEV*
LPaug09P162000mDRAFT_c1002704LPaug09P162000mDRAFT_10027044F066858KKLAPAEKTSKIRDISKGFRSIFLFRKMYDADAKRTSANKILKISGDRSEDMNAPSTVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG*
LPaug09P162000mDRAFT_c1003724LPaug09P162000mDRAFT_10037241F031535TTDNIIARGPKNTRAYVAIASANQLRGLTNEVNHFQVPFKTFEFSTVNIK*
LPaug09P162000mDRAFT_c1003756LPaug09P162000mDRAFT_10037563F037770LAFNADTTVDLPEPGMPVRQTISFAKMKLFTNSSL*
LPaug09P162000mDRAFT_c1003963LPaug09P162000mDRAFT_10039633F025055MSYFRNSVGDKKIIKATYSDSQMIEVLGGTVKKIFNYEEEDNVTFLKNEVFWLNYLKSKWVPELLEVGKNYVITSYYGPDLTKVHHLSRPKDLASQTLEMYRFFKDKNVFKLNGALRNMTLNKGQLVAFDFKHARFRTNKYIDYEIYSYEKWLSKIDNELVEKLKLLI*
LPaug09P162000mDRAFT_c1004679LPaug09P162000mDRAFT_10046792F040684MKRVIYLIILAMSLTLVFSQGKPCCKNKNGKGKVSCKFNRANIDVNKDGTVIEDGTQIAAAGVQCPLSAQNSSINKKNCTNCAKSPWWKFWGKKKGCCNTNS*
LPaug09P162000mDRAFT_c1004778LPaug09P162000mDRAFT_10047782F078841VFDDSDVVHSESRSDKAKRAISEYLDEYGQVRATELKKEVCDERGICSEKIFYRCLFELVKSKRIIKNEQNRGNVSYYKPDWGVYENMINTDVIKQGTSTVRILAEVGRHENEVMQLTLLKMAFGNIMSMYASMTLITQQPSKAKTSAVITNTLKNTIPELLEMFSIALEKCGKNRSRILSSLMDYRDGNMDGGWVLENHPDFKK*
LPaug09P162000mDRAFT_c1005206LPaug09P162000mDRAFT_10052063F008912VKNLVVTLGITGCGKSTWLKDKSPVIETDDLRVELLDDISNVTQEGFIFGTAAKRISKLFDTHDTVYFGATLVDSKHRIPFLQSIKDMCKHKFVIEMIIFPGIPELSKERIAKALKDGIQRADSIQFVDEQYEQYLHTISILDDEKDFYRMIKRVDNPNDEARKINNXVEDISEKLDMIIEQNDQD*
LPaug09P162000mDRAFT_c1009251LPaug09P162000mDRAFT_10092513F031535MIIDSIDKPSPKATTDNIIARGPKNTRAYVAIASANQLRGLTNEVNHFQVPFKTFEFYTVNIE*
LPaug09P162000mDRAFT_c1011074LPaug09P162000mDRAFT_10110741F062844HHPAVFLTQDGTESLCAEAANGKATTPATSAKSRVVFLVMIFDFALKVVS*
LPaug09P162000mDRAFT_c1012031LPaug09P162000mDRAFT_10120311F060128MADEFDFGFSAVSTEEFSKTQTVTETQPSAVSSEEFGELKKKLDSISSLIQTXGDREDTSLFDETGEIVAANGEKISRVEDKIDKILA
LPaug09P162000mDRAFT_c1012329LPaug09P162000mDRAFT_10123291F001048MKIKSTKQFWWRFNHLKRNGGEITVTDRTSEMDVKEFNRIESLVNKRVRWELGSEGYSIWSECGYKDIPTLAKAYRI
LPaug09P162000mDRAFT_c1012472LPaug09P162000mDRAFT_10124722F074984VNKESYS*TNQAVKMNNKINTAEVILFNILYMFMNCDFDVSDKESEIIENTMRELTDEEKKIIESQTKDNEKIISKGFDKIKSRTMEMGKLINETKDSEGIKKSFIEVIKAMILIDGVIHKNEKTMFNELCKLWDVESALEIK*
LPaug09P162000mDRAFT_c1012626LPaug09P162000mDRAFT_10126263F006146LKDLLIDYKMIITTATIIIVQALVVSWIVFTNPEPCPRKYRVTQEKGGVLVNSSDVHRYCELDYGGKFVLKDEYKE*
LPaug09P162000mDRAFT_c1016464LPaug09P162000mDRAFT_10164641F018452ITCVYNGGPVGYYKYSSNPASEGRLVQNIKDSFKFYQTNLRTGKVHEIDWHHLQMSNRDDFLGFIQGVGYEGDREADTRFGAFSDAADNAYCFRGNWGGTWVSNTALSHSDLQGDDSETKASQPFRVNGFAMDPLGWATENNKDATNTWIWSPSHHPDRTVDDEDKDEYPNITSGAADSNELMAKGGMENDPKFQTQADNAYWANNYPEDTT*
LPaug09P162000mDRAFT_c1016927LPaug09P162000mDRAFT_10169272F101330SGSNQSSLMWLQNNYTVSLCGFIGVCIGYFTGHQEICIMIGVGIGILIRFVQSKSK*
LPaug09P162000mDRAFT_c1017329LPaug09P162000mDRAFT_10173291F013899MFPDTSEIEEGEKGQFELFQSGVSFMKAGHGKFFDLEDVKKKLSESGQDLFTNR*
LPaug09P162000mDRAFT_c1018630LPaug09P162000mDRAFT_10186301F034336MKINVKVLSAFLLIVNLYAVENPEDVKPTIQNGKGLFVLLDDTSWISQIVAEAYILGTIDGIITRKRPLRALCGNKVDKALLTIPNGIEIERIISIVHQFLKDNTENLYKPSIALIRQSLLRAFDQYDIAGY*
LPaug09P162000mDRAFT_c1020893LPaug09P162000mDRAFT_10208931F080505HVVVEMDADVLVSAKDDIWSQVDKTGRRWVELSWFASATRTGPKFDKVEKDLNTLITNLVKKHLTKILGKNTVISTHEYELWGAMKRHLHGDGQKLRLVIKDYFDGVEKVLKKNSEVMSNILHGYAKGKRMTDNAWDEQIVNNIKIKKVHVWKTNRDDVWGPDEIKQHITDVKKWPIKVWDAS
LPaug09P162000mDRAFT_c1022400LPaug09P162000mDRAFT_10224001F095618FSHRATNFRPNILVTNTPVISMINNTKIIPDPGIVVSKLNIASGRYFCGTRLLISSKKNLITMTLKTRGIQKRRPEIK*
LPaug09P162000mDRAFT_c1023797LPaug09P162000mDRAFT_10237972F015350VMAILVGWQYDAALQKNLHEVEIRIKKFESVDLFNILEQISLAHIESVESVDILNKKQIEVQALEKEIKEKFTIQEXELRAQVKTIETKLQKLRSELNDGLTKIERNVSTIDSVVDEKFKTL
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