NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300000188

3300000188: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 60 08/10/11 150m



Overview

Basic Information
IMG/M Taxon OID3300000188 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046785 | Gp0053654 | Ga0026219
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 60 08/10/11 150m
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size97531493
Sequencing Scaffolds42
Novel Protein Genes47
Associated Families42

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available26
All Organisms → Viruses → Predicted Viral12
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomecoastal inletsea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSaanich Inlet 60, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)N/ADepth (m)150
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005546Metagenome / Metatranscriptome397Y
F015932Metagenome / Metatranscriptome251N
F016996Metagenome / Metatranscriptome243N
F017149Metagenome / Metatranscriptome242Y
F018617Metagenome234Y
F018621Metagenome234Y
F020253Metagenome / Metatranscriptome225Y
F023366Metagenome / Metatranscriptome210N
F024583Metagenome / Metatranscriptome205Y
F027418Metagenome194Y
F029561Metagenome / Metatranscriptome188Y
F038416Metagenome / Metatranscriptome166N
F038690Metagenome / Metatranscriptome165N
F039110Metagenome / Metatranscriptome164Y
F043616Metagenome / Metatranscriptome156Y
F046469Metagenome151Y
F046847Metagenome / Metatranscriptome150N
F048788Metagenome147Y
F049290Metagenome147N
F050662Metagenome145N
F053554Metagenome / Metatranscriptome141Y
F055781Metagenome / Metatranscriptome138N
F055790Metagenome / Metatranscriptome138Y
F055857Metagenome138Y
F059474Metagenome / Metatranscriptome134Y
F063751Metagenome129N
F066454Metagenome / Metatranscriptome126N
F067831Metagenome125N
F070021Metagenome / Metatranscriptome123N
F075397Metagenome / Metatranscriptome119N
F076496Metagenome / Metatranscriptome118N
F078399Metagenome / Metatranscriptome116Y
F078811Metagenome / Metatranscriptome116N
F079207Metagenome116Y
F083344Metagenome / Metatranscriptome113N
F083345Metagenome113N
F084269Metagenome / Metatranscriptome112N
F089151Metagenome / Metatranscriptome109Y
F090856Metagenome108N
F098166Metagenome / Metatranscriptome104N
F101844Metagenome / Metatranscriptome102Y
F103400Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
SI60aug11_150mDRAFT_c1001217Not Available6410Open in IMG/M
SI60aug11_150mDRAFT_c1001865All Organisms → Viruses → Predicted Viral4874Open in IMG/M
SI60aug11_150mDRAFT_c1002557All Organisms → Viruses → Predicted Viral3968Open in IMG/M
SI60aug11_150mDRAFT_c1004935All Organisms → Viruses → Predicted Viral2521Open in IMG/M
SI60aug11_150mDRAFT_c1005041All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium2486Open in IMG/M
SI60aug11_150mDRAFT_c1005617All Organisms → Viruses → Predicted Viral2298Open in IMG/M
SI60aug11_150mDRAFT_c1006271Not Available2139Open in IMG/M
SI60aug11_150mDRAFT_c1006727All Organisms → Viruses → Predicted Viral2030Open in IMG/M
SI60aug11_150mDRAFT_c1007263All Organisms → Viruses → Predicted Viral1922Open in IMG/M
SI60aug11_150mDRAFT_c1009588All Organisms → Viruses → Predicted Viral1542Open in IMG/M
SI60aug11_150mDRAFT_c1009745All Organisms → Viruses → Predicted Viral1523Open in IMG/M
SI60aug11_150mDRAFT_c1010198Not Available1469Open in IMG/M
SI60aug11_150mDRAFT_c1011207Not Available1354Open in IMG/M
SI60aug11_150mDRAFT_c1012133All Organisms → Viruses → Predicted Viral1273Open in IMG/M
SI60aug11_150mDRAFT_c1012477All Organisms → Viruses → Predicted Viral1247Open in IMG/M
SI60aug11_150mDRAFT_c1012843All Organisms → Viruses → Predicted Viral1220Open in IMG/M
SI60aug11_150mDRAFT_c1014749All Organisms → Viruses → Predicted Viral1092Open in IMG/M
SI60aug11_150mDRAFT_c1016258Not Available1012Open in IMG/M
SI60aug11_150mDRAFT_c1016273Not Available1011Open in IMG/M
SI60aug11_150mDRAFT_c1017241Not Available966Open in IMG/M
SI60aug11_150mDRAFT_c1017736Not Available943Open in IMG/M
SI60aug11_150mDRAFT_c1018666Not Available909Open in IMG/M
SI60aug11_150mDRAFT_c1019326Not Available885Open in IMG/M
SI60aug11_150mDRAFT_c1020291All Organisms → cellular organisms → Archaea854Open in IMG/M
SI60aug11_150mDRAFT_c1022928Not Available776Open in IMG/M
SI60aug11_150mDRAFT_c1023061Not Available772Open in IMG/M
SI60aug11_150mDRAFT_c1023207Not Available768Open in IMG/M
SI60aug11_150mDRAFT_c1023878Not Available751Open in IMG/M
SI60aug11_150mDRAFT_c1026110Not Available702Open in IMG/M
SI60aug11_150mDRAFT_c1027810Not Available669Open in IMG/M
SI60aug11_150mDRAFT_c1028753Not Available653Open in IMG/M
SI60aug11_150mDRAFT_c1031351Not Available612Open in IMG/M
SI60aug11_150mDRAFT_c1031390All Organisms → cellular organisms → Bacteria612Open in IMG/M
SI60aug11_150mDRAFT_c1031830Not Available606Open in IMG/M
SI60aug11_150mDRAFT_c1032776Not Available593Open in IMG/M
SI60aug11_150mDRAFT_c1034120Not Available576Open in IMG/M
SI60aug11_150mDRAFT_c1034904Not Available567Open in IMG/M
SI60aug11_150mDRAFT_c1037441Not Available540Open in IMG/M
SI60aug11_150mDRAFT_c1038071Not Available534Open in IMG/M
SI60aug11_150mDRAFT_c1040095Not Available515Open in IMG/M
SI60aug11_150mDRAFT_c1041196Not Available505Open in IMG/M
SI60aug11_150mDRAFT_c1041718All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
SI60aug11_150mDRAFT_c1001217SI60aug11_150mDRAFT_10012171F046469MEYLAIAVLSCLVGSCSVQNTKAIEGEMPFVQGTPTKELLHEMPALINQPTDGSGNPVKITVAVYAFPDETGQRKQVGLSTAVSQGADVWVIQS
SI60aug11_150mDRAFT_c1001865SI60aug11_150mDRAFT_10018651F083345NTWEVSDEDSDALVQIGAVSMIKKGLKVVEEEEYYAKLQKLADTDEWESDDDKEGM*
SI60aug11_150mDRAFT_c1002557SI60aug11_150mDRAFT_10025576F039110MTKAASKKAVAKKTSAKYQLKALRDGSHGIDGGIYTYKKYDIITLSKKGHFDSMKELACFDEV*
SI60aug11_150mDRAFT_c1004935SI60aug11_150mDRAFT_10049358F083345VSEARKGMVSDYIVLPYEDVPDEIKDKAKGNTWEVSDEDADALLQIGAVSMIKRGLKVAEEEDYYAKLQKLADTDEWESDEDKEGM*
SI60aug11_150mDRAFT_c1005041SI60aug11_150mDRAFT_10050413F089151MDNFDFKKYLAEGKLHEENQSPKFKIGDYVQPIEGATYYFLDRPRGTISGKYVGQINDSFINKPENLETKDGEYLYHVEKLNYRGKMRSSYAFKESDLEIIPNPMEYIKSLEPYRRRN*
SI60aug11_150mDRAFT_c1005617SI60aug11_150mDRAFT_10056174F029561MSNQVDKLTDPAFEHTSILSRGQLQMIEDDPTKMETLARLMGAVNLDNLFRHMQNPTINPATRLEFQKMLNKMGKLEPDGKDAVGANGPQVVINITRAKDKEEAITIEGST
SI60aug11_150mDRAFT_c1006271SI60aug11_150mDRAFT_10062711F067831MKLNYFSFNNYSSSIVTQSLQAAAPFLTGSNPEYWSGKGDNYGVIAGYDWVPSSGSLKLLELNTNIQTPPETNFLDSAVTWWKANNYDTIVLVTRNEEGTVIPSLNLVGDITASLDIDGFTSSIYVQPSYPTPVPDFDVPNTTFVLRFGFDSASPIDYLASDKREFRNFASSSGIESLMPRKMADLPDGFSNGVGVPDVLIKDPTVDYQTLLMNSFQFYDITDDNKDYLLSQSYCEEFIQPDLNYNGAYYSEVRGIVMLTPQENIFLQPRGSITADNNIAQALLPC
SI60aug11_150mDRAFT_c1006727SI60aug11_150mDRAFT_10067274F046847MADEQTEQVETPKTENEVVISQSKLDKLIDKGFSKGANRAKTELADILGVDSIEQARELINAKRETDEANKSDLDKAAELIQTLNSTIDGLESNNKMMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFIEQLKGDKPYLFSGGEVQPKKVDATSNRASLDVGERVKSAKTMAELY
SI60aug11_150mDRAFT_c1007263SI60aug11_150mDRAFT_10072635F055857MSARIFMHENEHMNGYVFTDLVSKLKLERAEKSKXKMIKEIKRRQGAPKIIK*
SI60aug11_150mDRAFT_c1009588SI60aug11_150mDRAFT_10095881F103400LATPPDGTKLSLGKLGRATAVGNSDYISKTSLNSSARDSGTGKVSLSDFYISAIDNTLNG
SI60aug11_150mDRAFT_c1009745SI60aug11_150mDRAFT_10097453F055781AGSGLSMLGVAMGCKLYNKNIKTIYPVALSGYVYKNKKMWYDRLNDRHKFDGDFKVVQSDYPYQHKLKLDESLPLDQTYEAKAWDWMVKNIEPSENVLFWDVGIKEYDLSYIEPIKWHKSEYEMIIDRELRRKHEQVKHNFF*
SI60aug11_150mDRAFT_c1010198SI60aug11_150mDRAFT_10101985F098166MNILVSKDEEQSIYTTAMRFTMADGDMLLTATTEEIDRLGEWLGKNGLTGIYTDIEEDDFIECNNFMFTNGDIDINSDNPLTFIRLLK*
SI60aug11_150mDRAFT_c1011207SI60aug11_150mDRAFT_10112073F083344MITTIKFTSDDLTMLRGVMSCTAKKSVRRPALNGFHINKDHVVGTDGSRLAKFNTPHFDGELXEKGVIIPSIKIPFSIHTVIITIEDDTVTADKYSKQGKTTEVYQIIDANYPLYRNVLADADRGKTAVDKIAFNPMLISEVAKSIKATIIQIEFTFGGELSLIYVNIPELPEFTFGIMPARY*
SI60aug11_150mDRAFT_c1012133SI60aug11_150mDRAFT_10121331F016996KLRSGRDIPSTPQVDKIHKKVVAMTDRNDHSGARIEIAKACGDKKLVQIYNALELAHDNYSGAVGNGAIELRNKFSPVLNKAIERKFGKYADVIQDAL*
SI60aug11_150mDRAFT_c1012477SI60aug11_150mDRAFT_10124771F066454MSIRLDVLILINSGVTDRSEIMEKLGVNIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNVSRSELINLWNELTDYYLPYEGDKEFTGRRGLSSL*
SI60aug11_150mDRAFT_c1012843SI60aug11_150mDRAFT_10128431F023366IEQTSTGTVNMDVNGASFTADIDQDNASTINLHHDGASADYVILQTGGSGDILTLTVNGASANVDIIQRD*
SI60aug11_150mDRAFT_c1013058SI60aug11_150mDRAFT_10130583F016996MHKLRSGRDIPSTPQVDKIHKKVVAMTDRNDHSGARIEIAKACGDKQLVQIFSTLELIHDKYSGAVGNQSIELRGKMMNPLNKAIERKFGKYADVIQDAL*
SI60aug11_150mDRAFT_c1013971SI60aug11_150mDRAFT_10139711F027418EELIIYNNDLNLDNLPNSIKKIYIENYKKELNNLPNSIEYLELKNYELKIKKIPKKLKTVKCDKNYKYINDFKDYEVIYY*
SI60aug11_150mDRAFT_c1014749SI60aug11_150mDRAFT_10147491F020253MGKRSIPGIITKKGQPKVKKNMSHSTFTAKRHPNSK
SI60aug11_150mDRAFT_c1016258SI60aug11_150mDRAFT_10162581F070021FMTIIKWISVLSLWALIGLVVHNQFDPNTVFGSVMGSAFIFIWFGVLIIGIFIRQKLKNK
SI60aug11_150mDRAFT_c1016273SI60aug11_150mDRAFT_10162731F043616MAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDLTGGTNKSLVSLIECYYIIESIGSTEGKLTISAAVDAEYDEQAEAAGTQV
SI60aug11_150mDRAFT_c1017241SI60aug11_150mDRAFT_10172412F017149YNGGFPRNVTDNKQFDGWKQGNEKYKSAKDVVGYWNFDNVVGDMVIDKSGNDNHAKIHGALQKEKELRIGSLALIPNRRDGKFTCLEHEENGWSQTKFTHWETRENQLRFFNKVRRGLSSIKEDGLSSLKYEISHNEEFLDKHEFISVI*
SI60aug11_150mDRAFT_c1017736SI60aug11_150mDRAFT_10177363F048788MKNNYWIVDEWLIFKPEFNEELINYYDIINKYKKIMFSNYDNSLIAIETNNKYKEKYHNNYIRDIFN
SI60aug11_150mDRAFT_c1018666SI60aug11_150mDRAFT_10186663F055790GYINYAGGGNHIGAIGMGAAAGNSSNVLGDVSVTTVGVAAADTYMIGIEIGKMEGFELPNFMKNGQLGYNHNAAGFGDSY*
SI60aug11_150mDRAFT_c1019326SI60aug11_150mDRAFT_10193261F018617MFKLMYNTCMNNKRISKKDIENDLIRIFEKYPKSLEKAISICFNLILDCFVVIYGEKKTTKLLDDAKKSVNDGNHTQKQRKPRKTTKRSQ
SI60aug11_150mDRAFT_c1019388SI60aug11_150mDRAFT_10193882F049290RMSYVDNNNFYIYNLGDIIDDNLKDHPMGKTYNFATAVYDSCIVIQSIKSILDSKNVKYEFLQSMKHNFGHGNFKMRGDVKQELDYCLNLFKYPVMENWCYENYDFEKEKITWQDNGSRDGHPPMKHNFDYVKEFFPQYITDKVIEYYNINQEKFTDESEMKQENIYRGLKKEFLKNEKIIIN*
SI60aug11_150mDRAFT_c1020291SI60aug11_150mDRAFT_10202912F063751SNFHSTSETLIKPTTPPEGTKSGGIDPTPEPGSKEMGSASGYRQVQKGGQSIFAKNEKLWGKWVDHRIGGRVDSREWKGNKLVDLLPKGKK*
SI60aug11_150mDRAFT_c1022928SI60aug11_150mDRAFT_10229281F078811GDGEILLENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSNVDGETMRLSDINGTKSSQNHRINFAFPTEVTKSA*
SI60aug11_150mDRAFT_c1023061SI60aug11_150mDRAFT_10230611F078399MENNYWVVDGWLIFKPEFDEKLDEYYDVINKYNKIMFSNYNDPLIAIKTNN
SI60aug11_150mDRAFT_c1023207SI60aug11_150mDRAFT_10232072F075397MKYWHKRVEVVSFFDLDQENQAAEWKDDDNADEFAFLIAENGEYWNLDLFMRTESGRYDGVMGLTNTSAIGIVLSCSGESAVIQCFS*
SI60aug11_150mDRAFT_c1023878SI60aug11_150mDRAFT_10238781F050662EKIQVNYTDIRNKLAEQKQLLLAYKEYYESEEPEVTE*
SI60aug11_150mDRAFT_c1026110SI60aug11_150mDRAFT_10261103F076496ASIKRSKEAQDFIDANPDKFRVVSPEETAKTLQKQSGGYFKGQSVMGPSKKKGKSS*
SI60aug11_150mDRAFT_c1027810SI60aug11_150mDRAFT_10278101F024583RTMKTIIIALLVLCFTATVGNTNENNIINKVTTHISNEIQDIKEFQKDNWEKGKIQTANNIAMIKSWFVKN*
SI60aug11_150mDRAFT_c1028753SI60aug11_150mDRAFT_10287533F053554MKIGIDYSLSSPGVCVNTSEGEFRYEDCTFYFLTNTKKYNDTFKVITAPVNMRSEAVKFIGSPHQLYTNEPERYSQIADWVVGIIKSYGDATTGSNRIKP
SI60aug11_150mDRAFT_c1031351SI60aug11_150mDRAFT_10313511F038690MALKASKKRLNLFTSNFSLTYFISFMLLTILIMFMDSRYDYLKQIRKDFSVITSPIIIFTNDTINFFENFQSLSXSKISLEEEIDQLNIKINHLAIENQIRNFLVVENKNLREANLFSKNQELKKIFPAEIIKPMIRGKNKIITINKGSKDG
SI60aug11_150mDRAFT_c1031390SI60aug11_150mDRAFT_10313901F084269MFRLKSKKQRKNSLIVLRAINRINRYEMSENHLYRAY
SI60aug11_150mDRAFT_c1031830SI60aug11_150mDRAFT_10318303F005546NKSLVSLIECYYLIEGTGILTISAGDETLPLDGKGKYGLRPGQLKFGNDKIFNLTTDSNVKSYLLVTEFRRESNG*
SI60aug11_150mDRAFT_c1032776SI60aug11_150mDRAFT_10327762F015932MMKKDKKNMKLNTPDILWKLDNLADQVCLDNDNIVRWCIDQNDHDDVPDRTARGILQKHGLKVSDLKTLDNDGVLVHRLGDDIPGGMVDDRCLHISTHLVPVLRVLPNILDKVW*
SI60aug11_150mDRAFT_c1033780SI60aug11_150mDRAFT_10337801F027418FNQEFNIPLNVKSLKMEYCNNQYIIDNLHNNIEELKIYSYDLNLDNLPNSIKKINIINYKKELNNLPNSIEYLELINYYLKIKKIPKNLKTIKCDKEYKYIDDFEDYEVIHH*
SI60aug11_150mDRAFT_c1033780SI60aug11_150mDRAFT_10337802F048788MENNYWIVDDLLIFKPEFNEELTDYYDVINKYKKIKFSNYNDPLIAIEIHNLYNDKYIKKYIKNKFN
SI60aug11_150mDRAFT_c1034120SI60aug11_150mDRAFT_10341201F079207MIIKLHARRIDTKMRVAIYAMTEFAMSTLIPSTRLRNNLTINIHLKH
SI60aug11_150mDRAFT_c1034904SI60aug11_150mDRAFT_10349041F018621MKATEKIKLMMRLEKGFQKLDFEELHMIRDTLNKEIEIKSKLFFRGEKL
SI60aug11_150mDRAFT_c1037441SI60aug11_150mDRAFT_10374412F048788MENNYWIVKDWLIFKPEFNEELDEYYSVINKYKKIMFSNYNDPLIAIKTNNEWNREYLNNYFKNIFNQKIDLSNNIN
SI60aug11_150mDRAFT_c1038071SI60aug11_150mDRAFT_10380711F090856KAEKDDLNHWIKQHKNTFNTFKDTKFYKVNPNSIGTSPIDVMIPEWHDCNNLEYITQHDLDKKFKL*
SI60aug11_150mDRAFT_c1040095SI60aug11_150mDRAFT_10400952F059474MAFKAIDRNDTKEFVSSEDPAIDIANSDIEAYKESHDIKHLSFKDGESPTVFHMGTITFMKFAEIKDKHISFDLGSDGQEINTNLFGLTADSLRHSLKKADNLPFPIKIERGRLSDTTMDKLARLGIVEELGNIALNLNGF
SI60aug11_150mDRAFT_c1041196SI60aug11_150mDRAFT_10411961F101844SNLLWDESADALEFGNSFLTITDARTTGTMDVRGLTIDVSNKLDTGSSNDRIGIDVDVIGDVSGYTIRDAVAIRAVSRQSTGAEVTRLNTPIHSVLDMANTASANNSGTTLSGAYGLAIDHDDTIATRTGQPTAFISFGELYVGGTESIETAYLFDIFPEGKTGDATY
SI60aug11_150mDRAFT_c1041718SI60aug11_150mDRAFT_10417181F038416YAEGYVSKIKIVHQTEVSCSRGHPTHYMKIRPVYDTYGYKEEGRVVCEKCGTLYRLMEPTLEE*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.