NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000186

3300000186: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 2000m



Overview

Basic Information
IMG/M Taxon OID3300000186 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046785 | Gp0053644 | Ga0026217
Sample NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 2000m
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size31667212
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium1
Not Available6
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus1
All Organisms → cellular organisms → Archaea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine aphotic zone → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationP16, Pacific Ocean
CoordinatesLat. (o)49.283333Long. (o)-134.666667Alt. (m)N/ADepth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002006Metagenome / Metatranscriptome605Y
F008912Metagenome / Metatranscriptome326Y
F013190Metagenome / Metatranscriptome273Y
F025141Metagenome / Metatranscriptome203Y
F027203Metagenome195Y
F031535Metagenome182N
F034336Metagenome / Metatranscriptome175N
F050430Metagenome / Metatranscriptome145N
F064803Metagenome128Y
F078841Metagenome / Metatranscriptome116N
F099440Metagenome / Metatranscriptome103N
F101336Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
LPfeb10P162000mDRAFT_c1002770All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1416Open in IMG/M
LPfeb10P162000mDRAFT_c1003440All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium1239Open in IMG/M
LPfeb10P162000mDRAFT_c1004055Not Available1131Open in IMG/M
LPfeb10P162000mDRAFT_c1004360All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1079Open in IMG/M
LPfeb10P162000mDRAFT_c1006303Not Available865Open in IMG/M
LPfeb10P162000mDRAFT_c1006824All Organisms → cellular organisms → Bacteria825Open in IMG/M
LPfeb10P162000mDRAFT_c1007011All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus813Open in IMG/M
LPfeb10P162000mDRAFT_c1010823Not Available635Open in IMG/M
LPfeb10P162000mDRAFT_c1012280All Organisms → cellular organisms → Archaea590Open in IMG/M
LPfeb10P162000mDRAFT_c1013336Not Available563Open in IMG/M
LPfeb10P162000mDRAFT_c1013721Not Available554Open in IMG/M
LPfeb10P162000mDRAFT_c1014035Not Available547Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
LPfeb10P162000mDRAFT_c1002770LPfeb10P162000mDRAFT_10027704F013190CDGSIPLNEMPSTVASKVASSTKVDIAEIIAFHSLEVFVLAENSNLIK*
LPfeb10P162000mDRAFT_c1003440LPfeb10P162000mDRAFT_10034402F099440VXLIILKNQVLNGAKLIDGNGRKIMVCGLHNTGQEKYIENFSQWTCNLLASCIVYID*
LPfeb10P162000mDRAFT_c1004055LPfeb10P162000mDRAFT_10040551F027203QGSLLNDFVTTAPAPAWYRRSKTSSDIPKMPEARIVGLSSVSVPIEVESVGFTLNIFSPFSYNS*
LPfeb10P162000mDRAFT_c1004360LPfeb10P162000mDRAFT_10043602F025141MIQCEYCDKNFIESMNGLAEKTFHEMLHAPEIVNQ*
LPfeb10P162000mDRAFT_c1006303LPfeb10P162000mDRAFT_10063031F101336NSFIPTKIALVGEPSLTSVDTFVSKGTAKTSFCGNSWQATY*
LPfeb10P162000mDRAFT_c1006824LPfeb10P162000mDRAFT_10068241F008912VKNLVVTLGITGCGKSTWLKDKSPVIETDDLRVELLDDISNVTQEGFIFGTAAKRISKLFDTHDTVYFGATLVDSKHRIPFLQSIKDMCKHKFVIEMIIFPGIPELSKERIAKALKDGIQRADSIQFVDEQYEQYLHTISILDDEKDFYRMIKRVDNPNDEARKINNRVEDISEKLDMIIEQNDQ
LPfeb10P162000mDRAFT_c1007011LPfeb10P162000mDRAFT_10070111F031535VAIASANQLRGLTNEVNHFQVPFKTFEFYTVNIE*
LPfeb10P162000mDRAFT_c1010823LPfeb10P162000mDRAFT_10108231F034336MKINVKVLSAFLLIVNLYAVENPEDVKPTIQNGKGLFVLLDDTSWISQIVAEAYILGTIDGIITRKRPLRALCGNKVDKALLTIPNGIEIERIISIVHQFLKDNXENLYKPSIALIRQSLLRAFDQYDIAGY*LSYVKIIQTVNSPNFQNI
LPfeb10P162000mDRAFT_c1012280LPfeb10P162000mDRAFT_10122801F078841MFDDSDVVHSESRSDKAKRAISEYLDEYGQVRATELKKEVCDERGICSEKIFYRCLFELVKSKRIIKNEQNRGNVSYYKPDWGVYENMINTDVIKQGTSTVRILAEVGRHENEVMQLTLLKMAFGNIMSMYASMTLITQQPSKAKTSAVITNTXKNTIPELLEMFSIALEKCGKNRSR
LPfeb10P162000mDRAFT_c1013336LPfeb10P162000mDRAFT_10133361F050430MDKKLKENIVVGIKIVGMLFFLIVLITTLVWPGGVDTLANLFSA
LPfeb10P162000mDRAFT_c1013721LPfeb10P162000mDRAFT_10137212F064803TINNPSPSPNNVRPKHKKRKVEIFGLKFRGLSELHETLGIFFKDKNMFKCYLLLYN*
LPfeb10P162000mDRAFT_c1014035LPfeb10P162000mDRAFT_10140351F002006HSYLRYSVMPEELQSVKLQVGLLQQDVEARGKQIDALLSKLDSTADKIVELTVEIKSLNSRQERHSKVDDEIRSELKLLHSRAGSIHDEIGKSERRVSDSIHKLEERVRAVEQYKSKL
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