Basic Information | |
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IMG/M Taxon OID | 3300000183 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046785 | Gp0053639 | Ga0026208 |
Sample Name | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P20 500m |
Sequencing Status | Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 47736055 |
Sequencing Scaffolds | 37 |
Novel Protein Genes | 41 |
Associated Families | 37 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → Viruses → Predicted Viral | 1 |
Not Available | 27 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 3 |
All Organisms → Viruses → environmental samples → uncultured virus | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage Mosig EXVC030M | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → marine aphotic zone → sea water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | P20, Pacific Ocean | |||||||
Coordinates | Lat. (o) | 49.566667 | Long. (o) | -138.666667 | Alt. (m) | N/A | Depth (m) | 500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001048 | Metagenome / Metatranscriptome | 793 | Y |
F001066 | Metagenome / Metatranscriptome | 788 | Y |
F001235 | Metagenome / Metatranscriptome | 741 | Y |
F001620 | Metagenome / Metatranscriptome | 662 | Y |
F003092 | Metagenome / Metatranscriptome | 508 | Y |
F003514 | Metagenome / Metatranscriptome | 482 | Y |
F004989 | Metagenome / Metatranscriptome | 416 | Y |
F005516 | Metagenome | 398 | Y |
F006423 | Metagenome | 373 | Y |
F006868 | Metagenome | 363 | Y |
F007551 | Metagenome / Metatranscriptome | 349 | Y |
F007773 | Metagenome | 345 | Y |
F008525 | Metagenome / Metatranscriptome | 332 | Y |
F011447 | Metagenome / Metatranscriptome | 291 | Y |
F011767 | Metagenome / Metatranscriptome | 287 | Y |
F016411 | Metagenome | 247 | Y |
F017906 | Metagenome | 238 | Y |
F019021 | Metagenome | 232 | Y |
F025055 | Metagenome | 203 | Y |
F029786 | Metagenome / Metatranscriptome | 187 | Y |
F031924 | Metagenome / Metatranscriptome | 181 | Y |
F032440 | Metagenome | 180 | Y |
F034993 | Metagenome | 173 | Y |
F056895 | Metagenome / Metatranscriptome | 137 | Y |
F060983 | Metagenome / Metatranscriptome | 132 | Y |
F063198 | Metagenome / Metatranscriptome | 130 | N |
F063595 | Metagenome | 129 | N |
F066858 | Metagenome / Metatranscriptome | 126 | N |
F067826 | Metagenome / Metatranscriptome | 125 | Y |
F081452 | Metagenome / Metatranscriptome | 114 | N |
F082825 | Metagenome / Metatranscriptome | 113 | N |
F087318 | Metagenome | 110 | N |
F090848 | Metagenome / Metatranscriptome | 108 | N |
F092225 | Metagenome | 107 | N |
F094004 | Metagenome | 106 | Y |
F101334 | Metagenome / Metatranscriptome | 102 | Y |
F101866 | Metagenome | 102 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
LPaug08P20500mDRAFT_c1000492 | All Organisms → Viruses → Predicted Viral | 3573 | Open in IMG/M |
LPaug08P20500mDRAFT_c1000825 | Not Available | 2846 | Open in IMG/M |
LPaug08P20500mDRAFT_c1001362 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales | 2261 | Open in IMG/M |
LPaug08P20500mDRAFT_c1001579 | Not Available | 2117 | Open in IMG/M |
LPaug08P20500mDRAFT_c1002143 | Not Available | 1805 | Open in IMG/M |
LPaug08P20500mDRAFT_c1002863 | Not Available | 1539 | Open in IMG/M |
LPaug08P20500mDRAFT_c1002881 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1533 | Open in IMG/M |
LPaug08P20500mDRAFT_c1003339 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1415 | Open in IMG/M |
LPaug08P20500mDRAFT_c1004124 | Not Available | 1257 | Open in IMG/M |
LPaug08P20500mDRAFT_c1005122 | Not Available | 1118 | Open in IMG/M |
LPaug08P20500mDRAFT_c1007182 | Not Available | 919 | Open in IMG/M |
LPaug08P20500mDRAFT_c1008295 | Not Available | 848 | Open in IMG/M |
LPaug08P20500mDRAFT_c1009322 | Not Available | 794 | Open in IMG/M |
LPaug08P20500mDRAFT_c1009389 | Not Available | 791 | Open in IMG/M |
LPaug08P20500mDRAFT_c1009840 | Not Available | 771 | Open in IMG/M |
LPaug08P20500mDRAFT_c1012160 | Not Available | 692 | Open in IMG/M |
LPaug08P20500mDRAFT_c1012804 | All Organisms → cellular organisms → Bacteria | 674 | Open in IMG/M |
LPaug08P20500mDRAFT_c1013235 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 661 | Open in IMG/M |
LPaug08P20500mDRAFT_c1014203 | Not Available | 637 | Open in IMG/M |
LPaug08P20500mDRAFT_c1014275 | Not Available | 635 | Open in IMG/M |
LPaug08P20500mDRAFT_c1014709 | Not Available | 625 | Open in IMG/M |
LPaug08P20500mDRAFT_c1015132 | Not Available | 615 | Open in IMG/M |
LPaug08P20500mDRAFT_c1015540 | Not Available | 607 | Open in IMG/M |
LPaug08P20500mDRAFT_c1016072 | Not Available | 596 | Open in IMG/M |
LPaug08P20500mDRAFT_c1016184 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 594 | Open in IMG/M |
LPaug08P20500mDRAFT_c1016501 | Not Available | 588 | Open in IMG/M |
LPaug08P20500mDRAFT_c1016920 | Not Available | 580 | Open in IMG/M |
LPaug08P20500mDRAFT_c1017495 | Not Available | 570 | Open in IMG/M |
LPaug08P20500mDRAFT_c1017935 | Not Available | 563 | Open in IMG/M |
LPaug08P20500mDRAFT_c1018669 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 551 | Open in IMG/M |
LPaug08P20500mDRAFT_c1019841 | All Organisms → Viruses → environmental samples → uncultured virus | 534 | Open in IMG/M |
LPaug08P20500mDRAFT_c1019975 | Not Available | 532 | Open in IMG/M |
LPaug08P20500mDRAFT_c1020675 | Not Available | 522 | Open in IMG/M |
LPaug08P20500mDRAFT_c1021401 | Not Available | 512 | Open in IMG/M |
LPaug08P20500mDRAFT_c1021404 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage Mosig EXVC030M | 512 | Open in IMG/M |
LPaug08P20500mDRAFT_c1021817 | Not Available | 507 | Open in IMG/M |
LPaug08P20500mDRAFT_c1021935 | Not Available | 506 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
LPaug08P20500mDRAFT_c1000492 | LPaug08P20500mDRAFT_10004921 | F025055 | FLKNEVFWLNYLKSKWVPELLEVGKNYVITRYYGPDLTKVHHLSRPNDLANQTLEMYRFFKDKNVFKLNGALRNMTLNKGQLVAFDFKHARFRTNKYIDYEIVSYEKWLSKIDNELVEKLKLLI* |
LPaug08P20500mDRAFT_c1000559 | LPaug08P20500mDRAFT_10005591 | F066858 | KTSKIRDVSNGFPSIFLFRKMYDADAKRTSANKILKISGDRSEDMNAPSTVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPANVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG* |
LPaug08P20500mDRAFT_c1000825 | LPaug08P20500mDRAFT_10008257 | F092225 | MTAPAFLATSTGAYSEYKVMSIIKTGTDFTLSLAKLPTTNDMVLSRITGYECKVSRALKQGIEYICRDVKIHPPENGKINIDKKKE* |
LPaug08P20500mDRAFT_c1001270 | LPaug08P20500mDRAFT_10012704 | F101334 | KGKGELADKFKLAFAEKYKIKQEEVKQGIVDKVYNKNKVERT* |
LPaug08P20500mDRAFT_c1001362 | LPaug08P20500mDRAFT_10013623 | F081452 | LFMIPVLSLAQVAREDGVISDASRIFKDPTNFNIIISDKVA* |
LPaug08P20500mDRAFT_c1001579 | LPaug08P20500mDRAFT_10015793 | F031924 | MDDRGPNDLERIIEDKNKIITHLKHDNKTLAKEVSDLIEQKKQLLDNVSKK* |
LPaug08P20500mDRAFT_c1002143 | LPaug08P20500mDRAFT_10021433 | F025055 | MSYFRNSAGDKKIVKATYSDSQMIEVLGDTVKKIFNYEGEDNIAFLKNEVFWLNYLKSKWVPELLEVGKNYVITSYYGPDLTKVHHLSRPKDLANQTLEMYRFFKDKNVFKLNGALRNMTLNKGQLVAFDFKHARFRTNKYKDYEIYSYEKWISKIDIELVEKLKLLI* |
LPaug08P20500mDRAFT_c1002178 | LPaug08P20500mDRAFT_10021781 | F067826 | STQTGRYTTGSNTYDADIDTSVSGYSIINRYNDNHRAYLKIETADEADVQIVQDSEAQHLDVGSSSSQQNITIIQTD* |
LPaug08P20500mDRAFT_c1002863 | LPaug08P20500mDRAFT_10028632 | F082825 | MVVGCGTSTIGCFGHWVKGPGHHRGTRTLLKDAHLPYYQCVDENNKGNNLKERRYL* |
LPaug08P20500mDRAFT_c1002881 | LPaug08P20500mDRAFT_10028813 | F001235 | LATKLNVDTGGLDVGKKLWERHQKDEYTHVDNYKEAICINCFKKDATSATIVDICGECGGKRGREPLLATIAQKMYGLXFFCGKHKFNIEQINARFCRRCHRKIANVTKAYNKAGGIYGNPFWTSMRKKNGKDWKEIFTKNLGNRR* |
LPaug08P20500mDRAFT_c1003339 | LPaug08P20500mDRAFT_10033395 | F101866 | MKFFRDKLYEDITIPAPPKDDMAEAKVVKKLISNRTAAQEKSIADH |
LPaug08P20500mDRAFT_c1004124 | LPaug08P20500mDRAFT_10041242 | F001235 | LATKLNVDTGGLDVGKKLWERHQKDEYTHVDNYKEAICINCFKKDATSATIVDICGECGGKRGREPLLATIAQKMYGLCFFCGKHKFNIEQINARFCRRCHRKIANVTKAYNKAGGIYGNPFWTSMRKKNGKDWKEIFTKNLGKKYLQRI* |
LPaug08P20500mDRAFT_c1004124 | LPaug08P20500mDRAFT_10041243 | F087318 | ISDKLDVNEAALALLDIWITPDDKIMVVCNCEKFFDRPDTSRSISCFQKNNVHKYLKGDEKLVKYDDVEFDPKTENIQFFKKRLRKAPIFFRVGRFWGNKPRKTMKIDWSKKFFNIKLNRIEFILFDPKAKPEPKPKVRSRNDIGYPKNRG* |
LPaug08P20500mDRAFT_c1005122 | LPaug08P20500mDRAFT_10051225 | F011767 | KKIGIWHSKFFSKLSEKAKNSKFWAILLTLAILYEIVEHVVYPILVPWLIYLNFWAD* |
LPaug08P20500mDRAFT_c1007182 | LPaug08P20500mDRAFT_10071821 | F094004 | MQSFQQHLKQHLKEGVAWQQSTSKMIFDFGQTGNMKIPLSSKMMTWIFNVQLPRVTVFHVTNGVGLGNLKKLQNKKKSISAFFNMNADYIDQGIKTEGGVVAELDANILMSSKNDILSMPDKAGRRWVELHNIDTDEKMHPEFEKMVIDLAIKHD |
LPaug08P20500mDRAFT_c1008295 | LPaug08P20500mDRAFT_10082952 | F001620 | MDAATLVTIITMFIVTDTSSEFVKYDGLMDCLKDPSMAEIDKDGNIISIKNKMPDQSGSLKLGGTAKSLTEKKKKKQTKVLTQD* |
LPaug08P20500mDRAFT_c1009322 | LPaug08P20500mDRAFT_10093221 | F008525 | MLTFKESFNEVIEAKLKLPSGEKVIKQLTKLGKKKNVTAVITSKFNLYIDGQKLDKYRSAKDAEKAVKEFIK |
LPaug08P20500mDRAFT_c1009389 | LPaug08P20500mDRAFT_10093892 | F006868 | RRSRGIKPNWPQSVEIGKDEKPQRVVDIEITDDDFRRVALQAHERDITINKMVGLIIKDGLGKSEYRFEHENKPQLLNEDK* |
LPaug08P20500mDRAFT_c1009840 | LPaug08P20500mDRAFT_10098401 | F016411 | PARGVVFTLQEKASMYKNLRLLFENHKITLRKVDKMVYQLSYLTREYTEGGIMKIKSEEHDDYPDSLVLACRAVTSG |
LPaug08P20500mDRAFT_c1012160 | LPaug08P20500mDRAFT_10121602 | F005516 | MKSFKGYLNEFVIQSTSDYVFDTMSNSISDIKIPISGPMFKRIWPDTIRATVFHSTDTEHLAGLKKLEGKKKSISAFFSMMSTQMEGGIATDGGVVVEMEADVLISAKDDIMSAVDKGGRRWVEMSWFENAQGRGNPVGFDKVEQGFNTLIKNLVKKHLP |
LPaug08P20500mDRAFT_c1012804 | LPaug08P20500mDRAFT_10128042 | F007551 | MLITKILTQAVEDAKYTGSSKFDLEHKIESINWIMSGDPQFKYYCKLLNIEPSYIQNKIKSYGDTRITPQQKVILKPIVEKLLKSKKYQDNWFAKHVEERI* |
LPaug08P20500mDRAFT_c1013235 | LPaug08P20500mDRAFT_10132351 | F007773 | VKQNNVINLSDYREEKETSQNPPQYIQDFEVGGYYIYPELGVMIHCMLITDSSHTHKNELMYIMEDQFGNLLSVPISDPDSMMGWRXLEKEVFTEMVKKGLPEPEPPRVG* |
LPaug08P20500mDRAFT_c1014203 | LPaug08P20500mDRAFT_10142032 | F029786 | GIRPEIGKDEEPWVSVGIEVKDEDFLKIAQEAHARDITFNKMINIILKTGIKDAEYKFEHDSRPQLLNEIGEPFKS* |
LPaug08P20500mDRAFT_c1014275 | LPaug08P20500mDRAFT_10142752 | F011447 | MTIKNTLVVDNTSKYIVQSKGIGSEIDQVIVDAEKLTSGNNKSLVSLIECYYLIEGTGTLTLSTSSEENDLTLTGKGKYGLRPDQLKFGN |
LPaug08P20500mDRAFT_c1014709 | LPaug08P20500mDRAFT_10147092 | F006423 | LRTFKQHLKEKVEYYLDTSKDNTEKYVAYDGSSWHTGRVGVKGENMFIKFVATHGKNSYFERAKLKKVTPEKLEKEAGTRVDFKKLYKR* |
LPaug08P20500mDRAFT_c1015132 | LPaug08P20500mDRAFT_10151321 | F034993 | LKTFKGYLTEFAIQSTSDYVFNTGTNSSGLMIPISGPMFKRIWPNTIRATVFHATDADHLAGLKRLEGGKKSISAFFSMMANQMEGGIATDGGVVIEMDADILVSAKDDIMSTVDKTGRRWVEMSWFENAQSWGNPAGFDKVERGLNTLIKTLVNKHLPKDITKGEHEYELWGNMKSHLKAGREGGGKRLNLVIKDYFDGVEK |
LPaug08P20500mDRAFT_c1015540 | LPaug08P20500mDRAFT_10155401 | F056895 | MEMELKQIPKPHKTTNPKHREDYVFVEKPGEDFTALKLISGPFSSIVYKYGAVGFRPESEKRPDGTLPMQFDYVIIENNI |
LPaug08P20500mDRAFT_c1016072 | LPaug08P20500mDRAFT_10160723 | F001048 | MKIVSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIESLVRKRVRWELGSEGMAIWDACG |
LPaug08P20500mDRAFT_c1016184 | LPaug08P20500mDRAFT_10161841 | F090848 | TGKSVVTGNMTRQYMNPGQALERTITLEGHIELDKFSVEMMALEDVVILRDLCNNQLNSMVKKVSVHR* |
LPaug08P20500mDRAFT_c1016501 | LPaug08P20500mDRAFT_10165012 | F087318 | MGISVHVYDTIDEYVLRNKHNVSDKLDVNEAALSLLDIWITPNDKIMLVCNXEKFFERPDTSRSISCFQKDNIHKYLKGDEKLVKYDDVEFDPKTENIQFFKKRLRKAPIFFRVGRFWGNKPRKTMKIDWSKKFFNIKLNRIEFILFDPKAK |
LPaug08P20500mDRAFT_c1016920 | LPaug08P20500mDRAFT_10169201 | F001066 | ISPFNSAKHFKDANIPAYCDQCIYRSIDAGGNGKCPKYEKAAVCSIRDDYIKIINMLDTRKPDDVKAMLDMIAKISFENVLMALTQAKMDGNVPDRNTKSEINTLLSVIKSINDLNTKVVVTQQTELDQKTGDISSIFKQIKAQGVLKEDG* |
LPaug08P20500mDRAFT_c1017495 | LPaug08P20500mDRAFT_10174951 | F003092 | GKENKMIKKLFLVLTLLFTWSSWSCEDLLTEEEFPMKLWLNGEEVDVEAEYQRITTFAEEIEYVGFDTTKTFVKKILVIHFQKEDSRVDLNKEHYAVIFTDWEGDTSNGLPIDEGSYQWPSVCPVCPRACMHGEPSKWVRMEIIGDSDVAVSGTAHIETISESGDTWIISGEGEGIFYNPYAEANMEGRI |
LPaug08P20500mDRAFT_c1017935 | LPaug08P20500mDRAFT_10179351 | F063595 | MVEHINGADLIIFCITDPSRLSNPFKLPITIDQAIDKNAFIEIKDTKKYRHSHGILPSVFNYKELQTAVKYYYKMLYDDSHMETTHRGLLREIENVVKKNNKKCIFLKCFSESFPDYTPENVVWGNLYLYEDISMKESNFDSNTISKDERKNHLNDKNNYNMYLFLKDIIDKDDFTPREVKMEKYFK |
LPaug08P20500mDRAFT_c1018669 | LPaug08P20500mDRAFT_10186691 | F004989 | MSIELEDLNNEKERLEGDRKTLLERLQEYQXGLTQTQQQIQAIGGAIQTCNFFIGKIQSPQESEDEKKSS |
LPaug08P20500mDRAFT_c1019841 | LPaug08P20500mDRAFT_10198411 | F032440 | MANVYKNIQAKITSAGSYDDMYTAPAETTSIVKSIKLYNTHGSNLVVDIKVYDLSSTTDFEYDTVT |
LPaug08P20500mDRAFT_c1019975 | LPaug08P20500mDRAFT_10199751 | F019021 | NSSYIMKNLYIENCLETLKRNLEYDYVVASPPDFNELKKDTEDSSWTYSDFLKTFAELLNPKGNFVSICISDRKSNGQVISKSSMVIEVFKSLGYILHTHKIWVKSTGTDMFRMNYQHLLTFSRNKEK |
LPaug08P20500mDRAFT_c1020675 | LPaug08P20500mDRAFT_10206751 | F017906 | TCGIEGGEKGQFDIFRNGELFLSKEDMGRFPTKEDVDAMIKELEPFSE* |
LPaug08P20500mDRAFT_c1021401 | LPaug08P20500mDRAFT_10214012 | F060983 | LGQIYIHVLNKELEKQKEESEDGKTRRYDFQKPII* |
LPaug08P20500mDRAFT_c1021404 | LPaug08P20500mDRAFT_10214042 | F003514 | IYTCPYIICNRNKYNVSINYMSGEIMITPQEYNKLRQEELILNAAKSGGAVKSEMLHGSLFVTFTSGFVDVLSQNLKYVLEKLLDNTTVKMYNTTNNEYAYDFI* |
LPaug08P20500mDRAFT_c1021817 | LPaug08P20500mDRAFT_10218171 | F063198 | LYIVRMRLEENSLISEDRLILNAPSKIRINRVKVVNTGAMEARSSGDVYPNPLGPIRNPSIIRNNTSGILVRRNNASDKKPKIAIKLNASNAVLTFIALR* |
LPaug08P20500mDRAFT_c1021935 | LPaug08P20500mDRAFT_10219351 | F005516 | MKSFKGYLNEFVIQSTSDYVFDTMSNSISDIKIPISGPMFKRIWPDTIRATVFHSTDTEHLAGLKKLEGKKKSISAFFSMMSTQMEGGIATDGGVVVEMEADVLISAKDDIMSAVDKGGRRWVEMSWFENAQGRGNPVGFDKVEQGFNTLIK |
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