NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000183

3300000183: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P20 500m



Overview

Basic Information
IMG/M Taxon OID3300000183 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046785 | Gp0053639 | Ga0026208
Sample NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P20 500m
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size47736055
Sequencing Scaffolds37
Novel Protein Genes41
Associated Families37

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
Not Available27
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote3
All Organisms → Viruses → environmental samples → uncultured virus1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage Mosig EXVC030M1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine aphotic zonesea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationP20, Pacific Ocean
CoordinatesLat. (o)49.566667Long. (o)-138.666667Alt. (m)N/ADepth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001048Metagenome / Metatranscriptome793Y
F001066Metagenome / Metatranscriptome788Y
F001235Metagenome / Metatranscriptome741Y
F001620Metagenome / Metatranscriptome662Y
F003092Metagenome / Metatranscriptome508Y
F003514Metagenome / Metatranscriptome482Y
F004989Metagenome / Metatranscriptome416Y
F005516Metagenome398Y
F006423Metagenome373Y
F006868Metagenome363Y
F007551Metagenome / Metatranscriptome349Y
F007773Metagenome345Y
F008525Metagenome / Metatranscriptome332Y
F011447Metagenome / Metatranscriptome291Y
F011767Metagenome / Metatranscriptome287Y
F016411Metagenome247Y
F017906Metagenome238Y
F019021Metagenome232Y
F025055Metagenome203Y
F029786Metagenome / Metatranscriptome187Y
F031924Metagenome / Metatranscriptome181Y
F032440Metagenome180Y
F034993Metagenome173Y
F056895Metagenome / Metatranscriptome137Y
F060983Metagenome / Metatranscriptome132Y
F063198Metagenome / Metatranscriptome130N
F063595Metagenome129N
F066858Metagenome / Metatranscriptome126N
F067826Metagenome / Metatranscriptome125Y
F081452Metagenome / Metatranscriptome114N
F082825Metagenome / Metatranscriptome113N
F087318Metagenome110N
F090848Metagenome / Metatranscriptome108N
F092225Metagenome107N
F094004Metagenome106Y
F101334Metagenome / Metatranscriptome102Y
F101866Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
LPaug08P20500mDRAFT_c1000492All Organisms → Viruses → Predicted Viral3573Open in IMG/M
LPaug08P20500mDRAFT_c1000825Not Available2846Open in IMG/M
LPaug08P20500mDRAFT_c1001362All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales2261Open in IMG/M
LPaug08P20500mDRAFT_c1001579Not Available2117Open in IMG/M
LPaug08P20500mDRAFT_c1002143Not Available1805Open in IMG/M
LPaug08P20500mDRAFT_c1002863Not Available1539Open in IMG/M
LPaug08P20500mDRAFT_c1002881All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1533Open in IMG/M
LPaug08P20500mDRAFT_c1003339All Organisms → cellular organisms → Bacteria → Proteobacteria1415Open in IMG/M
LPaug08P20500mDRAFT_c1004124Not Available1257Open in IMG/M
LPaug08P20500mDRAFT_c1005122Not Available1118Open in IMG/M
LPaug08P20500mDRAFT_c1007182Not Available919Open in IMG/M
LPaug08P20500mDRAFT_c1008295Not Available848Open in IMG/M
LPaug08P20500mDRAFT_c1009322Not Available794Open in IMG/M
LPaug08P20500mDRAFT_c1009389Not Available791Open in IMG/M
LPaug08P20500mDRAFT_c1009840Not Available771Open in IMG/M
LPaug08P20500mDRAFT_c1012160Not Available692Open in IMG/M
LPaug08P20500mDRAFT_c1012804All Organisms → cellular organisms → Bacteria674Open in IMG/M
LPaug08P20500mDRAFT_c1013235All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote661Open in IMG/M
LPaug08P20500mDRAFT_c1014203Not Available637Open in IMG/M
LPaug08P20500mDRAFT_c1014275Not Available635Open in IMG/M
LPaug08P20500mDRAFT_c1014709Not Available625Open in IMG/M
LPaug08P20500mDRAFT_c1015132Not Available615Open in IMG/M
LPaug08P20500mDRAFT_c1015540Not Available607Open in IMG/M
LPaug08P20500mDRAFT_c1016072Not Available596Open in IMG/M
LPaug08P20500mDRAFT_c1016184All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote594Open in IMG/M
LPaug08P20500mDRAFT_c1016501Not Available588Open in IMG/M
LPaug08P20500mDRAFT_c1016920Not Available580Open in IMG/M
LPaug08P20500mDRAFT_c1017495Not Available570Open in IMG/M
LPaug08P20500mDRAFT_c1017935Not Available563Open in IMG/M
LPaug08P20500mDRAFT_c1018669All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote551Open in IMG/M
LPaug08P20500mDRAFT_c1019841All Organisms → Viruses → environmental samples → uncultured virus534Open in IMG/M
LPaug08P20500mDRAFT_c1019975Not Available532Open in IMG/M
LPaug08P20500mDRAFT_c1020675Not Available522Open in IMG/M
LPaug08P20500mDRAFT_c1021401Not Available512Open in IMG/M
LPaug08P20500mDRAFT_c1021404All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage Mosig EXVC030M512Open in IMG/M
LPaug08P20500mDRAFT_c1021817Not Available507Open in IMG/M
LPaug08P20500mDRAFT_c1021935Not Available506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
LPaug08P20500mDRAFT_c1000492LPaug08P20500mDRAFT_10004921F025055FLKNEVFWLNYLKSKWVPELLEVGKNYVITRYYGPDLTKVHHLSRPNDLANQTLEMYRFFKDKNVFKLNGALRNMTLNKGQLVAFDFKHARFRTNKYIDYEIVSYEKWLSKIDNELVEKLKLLI*
LPaug08P20500mDRAFT_c1000559LPaug08P20500mDRAFT_10005591F066858KTSKIRDVSNGFPSIFLFRKMYDADAKRTSANKILKISGDRSEDMNAPSTVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPANVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG*
LPaug08P20500mDRAFT_c1000825LPaug08P20500mDRAFT_10008257F092225MTAPAFLATSTGAYSEYKVMSIIKTGTDFTLSLAKLPTTNDMVLSRITGYECKVSRALKQGIEYICRDVKIHPPENGKINIDKKKE*
LPaug08P20500mDRAFT_c1001270LPaug08P20500mDRAFT_10012704F101334KGKGELADKFKLAFAEKYKIKQEEVKQGIVDKVYNKNKVERT*
LPaug08P20500mDRAFT_c1001362LPaug08P20500mDRAFT_10013623F081452LFMIPVLSLAQVAREDGVISDASRIFKDPTNFNIIISDKVA*
LPaug08P20500mDRAFT_c1001579LPaug08P20500mDRAFT_10015793F031924MDDRGPNDLERIIEDKNKIITHLKHDNKTLAKEVSDLIEQKKQLLDNVSKK*
LPaug08P20500mDRAFT_c1002143LPaug08P20500mDRAFT_10021433F025055MSYFRNSAGDKKIVKATYSDSQMIEVLGDTVKKIFNYEGEDNIAFLKNEVFWLNYLKSKWVPELLEVGKNYVITSYYGPDLTKVHHLSRPKDLANQTLEMYRFFKDKNVFKLNGALRNMTLNKGQLVAFDFKHARFRTNKYKDYEIYSYEKWISKIDIELVEKLKLLI*
LPaug08P20500mDRAFT_c1002178LPaug08P20500mDRAFT_10021781F067826STQTGRYTTGSNTYDADIDTSVSGYSIINRYNDNHRAYLKIETADEADVQIVQDSEAQHLDVGSSSSQQNITIIQTD*
LPaug08P20500mDRAFT_c1002863LPaug08P20500mDRAFT_10028632F082825MVVGCGTSTIGCFGHWVKGPGHHRGTRTLLKDAHLPYYQCVDENNKGNNLKERRYL*
LPaug08P20500mDRAFT_c1002881LPaug08P20500mDRAFT_10028813F001235LATKLNVDTGGLDVGKKLWERHQKDEYTHVDNYKEAICINCFKKDATSATIVDICGECGGKRGREPLLATIAQKMYGLXFFCGKHKFNIEQINARFCRRCHRKIANVTKAYNKAGGIYGNPFWTSMRKKNGKDWKEIFTKNLGNRR*
LPaug08P20500mDRAFT_c1003339LPaug08P20500mDRAFT_10033395F101866MKFFRDKLYEDITIPAPPKDDMAEAKVVKKLISNRTAAQEKSIADH
LPaug08P20500mDRAFT_c1004124LPaug08P20500mDRAFT_10041242F001235LATKLNVDTGGLDVGKKLWERHQKDEYTHVDNYKEAICINCFKKDATSATIVDICGECGGKRGREPLLATIAQKMYGLCFFCGKHKFNIEQINARFCRRCHRKIANVTKAYNKAGGIYGNPFWTSMRKKNGKDWKEIFTKNLGKKYLQRI*
LPaug08P20500mDRAFT_c1004124LPaug08P20500mDRAFT_10041243F087318ISDKLDVNEAALALLDIWITPDDKIMVVCNCEKFFDRPDTSRSISCFQKNNVHKYLKGDEKLVKYDDVEFDPKTENIQFFKKRLRKAPIFFRVGRFWGNKPRKTMKIDWSKKFFNIKLNRIEFILFDPKAKPEPKPKVRSRNDIGYPKNRG*
LPaug08P20500mDRAFT_c1005122LPaug08P20500mDRAFT_10051225F011767KKIGIWHSKFFSKLSEKAKNSKFWAILLTLAILYEIVEHVVYPILVPWLIYLNFWAD*
LPaug08P20500mDRAFT_c1007182LPaug08P20500mDRAFT_10071821F094004MQSFQQHLKQHLKEGVAWQQSTSKMIFDFGQTGNMKIPLSSKMMTWIFNVQLPRVTVFHVTNGVGLGNLKKLQNKKKSISAFFNMNADYIDQGIKTEGGVVAELDANILMSSKNDILSMPDKAGRRWVELHNIDTDEKMHPEFEKMVIDLAIKHD
LPaug08P20500mDRAFT_c1008295LPaug08P20500mDRAFT_10082952F001620MDAATLVTIITMFIVTDTSSEFVKYDGLMDCLKDPSMAEIDKDGNIISIKNKMPDQSGSLKLGGTAKSLTEKKKKKQTKVLTQD*
LPaug08P20500mDRAFT_c1009322LPaug08P20500mDRAFT_10093221F008525MLTFKESFNEVIEAKLKLPSGEKVIKQLTKLGKKKNVTAVITSKFNLYIDGQKLDKYRSAKDAEKAVKEFIK
LPaug08P20500mDRAFT_c1009389LPaug08P20500mDRAFT_10093892F006868RRSRGIKPNWPQSVEIGKDEKPQRVVDIEITDDDFRRVALQAHERDITINKMVGLIIKDGLGKSEYRFEHENKPQLLNEDK*
LPaug08P20500mDRAFT_c1009840LPaug08P20500mDRAFT_10098401F016411PARGVVFTLQEKASMYKNLRLLFENHKITLRKVDKMVYQLSYLTREYTEGGIMKIKSEEHDDYPDSLVLACRAVTSG
LPaug08P20500mDRAFT_c1012160LPaug08P20500mDRAFT_10121602F005516MKSFKGYLNEFVIQSTSDYVFDTMSNSISDIKIPISGPMFKRIWPDTIRATVFHSTDTEHLAGLKKLEGKKKSISAFFSMMSTQMEGGIATDGGVVVEMEADVLISAKDDIMSAVDKGGRRWVEMSWFENAQGRGNPVGFDKVEQGFNTLIKNLVKKHLP
LPaug08P20500mDRAFT_c1012804LPaug08P20500mDRAFT_10128042F007551MLITKILTQAVEDAKYTGSSKFDLEHKIESINWIMSGDPQFKYYCKLLNIEPSYIQNKIKSYGDTRITPQQKVILKPIVEKLLKSKKYQDNWFAKHVEERI*
LPaug08P20500mDRAFT_c1013235LPaug08P20500mDRAFT_10132351F007773VKQNNVINLSDYREEKETSQNPPQYIQDFEVGGYYIYPELGVMIHCMLITDSSHTHKNELMYIMEDQFGNLLSVPISDPDSMMGWRXLEKEVFTEMVKKGLPEPEPPRVG*
LPaug08P20500mDRAFT_c1014203LPaug08P20500mDRAFT_10142032F029786GIRPEIGKDEEPWVSVGIEVKDEDFLKIAQEAHARDITFNKMINIILKTGIKDAEYKFEHDSRPQLLNEIGEPFKS*
LPaug08P20500mDRAFT_c1014275LPaug08P20500mDRAFT_10142752F011447MTIKNTLVVDNTSKYIVQSKGIGSEIDQVIVDAEKLTSGNNKSLVSLIECYYLIEGTGTLTLSTSSEENDLTLTGKGKYGLRPDQLKFGN
LPaug08P20500mDRAFT_c1014709LPaug08P20500mDRAFT_10147092F006423LRTFKQHLKEKVEYYLDTSKDNTEKYVAYDGSSWHTGRVGVKGENMFIKFVATHGKNSYFERAKLKKVTPEKLEKEAGTRVDFKKLYKR*
LPaug08P20500mDRAFT_c1015132LPaug08P20500mDRAFT_10151321F034993LKTFKGYLTEFAIQSTSDYVFNTGTNSSGLMIPISGPMFKRIWPNTIRATVFHATDADHLAGLKRLEGGKKSISAFFSMMANQMEGGIATDGGVVIEMDADILVSAKDDIMSTVDKTGRRWVEMSWFENAQSWGNPAGFDKVERGLNTLIKTLVNKHLPKDITKGEHEYELWGNMKSHLKAGREGGGKRLNLVIKDYFDGVEK
LPaug08P20500mDRAFT_c1015540LPaug08P20500mDRAFT_10155401F056895MEMELKQIPKPHKTTNPKHREDYVFVEKPGEDFTALKLISGPFSSIVYKYGAVGFRPESEKRPDGTLPMQFDYVIIENNI
LPaug08P20500mDRAFT_c1016072LPaug08P20500mDRAFT_10160723F001048MKIVSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIESLVRKRVRWELGSEGMAIWDACG
LPaug08P20500mDRAFT_c1016184LPaug08P20500mDRAFT_10161841F090848TGKSVVTGNMTRQYMNPGQALERTITLEGHIELDKFSVEMMALEDVVILRDLCNNQLNSMVKKVSVHR*
LPaug08P20500mDRAFT_c1016501LPaug08P20500mDRAFT_10165012F087318MGISVHVYDTIDEYVLRNKHNVSDKLDVNEAALSLLDIWITPNDKIMLVCNXEKFFERPDTSRSISCFQKDNIHKYLKGDEKLVKYDDVEFDPKTENIQFFKKRLRKAPIFFRVGRFWGNKPRKTMKIDWSKKFFNIKLNRIEFILFDPKAK
LPaug08P20500mDRAFT_c1016920LPaug08P20500mDRAFT_10169201F001066ISPFNSAKHFKDANIPAYCDQCIYRSIDAGGNGKCPKYEKAAVCSIRDDYIKIINMLDTRKPDDVKAMLDMIAKISFENVLMALTQAKMDGNVPDRNTKSEINTLLSVIKSINDLNTKVVVTQQTELDQKTGDISSIFKQIKAQGVLKEDG*
LPaug08P20500mDRAFT_c1017495LPaug08P20500mDRAFT_10174951F003092GKENKMIKKLFLVLTLLFTWSSWSCEDLLTEEEFPMKLWLNGEEVDVEAEYQRITTFAEEIEYVGFDTTKTFVKKILVIHFQKEDSRVDLNKEHYAVIFTDWEGDTSNGLPIDEGSYQWPSVCPVCPRACMHGEPSKWVRMEIIGDSDVAVSGTAHIETISESGDTWIISGEGEGIFYNPYAEANMEGRI
LPaug08P20500mDRAFT_c1017935LPaug08P20500mDRAFT_10179351F063595MVEHINGADLIIFCITDPSRLSNPFKLPITIDQAIDKNAFIEIKDTKKYRHSHGILPSVFNYKELQTAVKYYYKMLYDDSHMETTHRGLLREIENVVKKNNKKCIFLKCFSESFPDYTPENVVWGNLYLYEDISMKESNFDSNTISKDERKNHLNDKNNYNMYLFLKDIIDKDDFTPREVKMEKYFK
LPaug08P20500mDRAFT_c1018669LPaug08P20500mDRAFT_10186691F004989MSIELEDLNNEKERLEGDRKTLLERLQEYQXGLTQTQQQIQAIGGAIQTCNFFIGKIQSPQESEDEKKSS
LPaug08P20500mDRAFT_c1019841LPaug08P20500mDRAFT_10198411F032440MANVYKNIQAKITSAGSYDDMYTAPAETTSIVKSIKLYNTHGSNLVVDIKVYDLSSTTDFEYDTVT
LPaug08P20500mDRAFT_c1019975LPaug08P20500mDRAFT_10199751F019021NSSYIMKNLYIENCLETLKRNLEYDYVVASPPDFNELKKDTEDSSWTYSDFLKTFAELLNPKGNFVSICISDRKSNGQVISKSSMVIEVFKSLGYILHTHKIWVKSTGTDMFRMNYQHLLTFSRNKEK
LPaug08P20500mDRAFT_c1020675LPaug08P20500mDRAFT_10206751F017906TCGIEGGEKGQFDIFRNGELFLSKEDMGRFPTKEDVDAMIKELEPFSE*
LPaug08P20500mDRAFT_c1021401LPaug08P20500mDRAFT_10214012F060983LGQIYIHVLNKELEKQKEESEDGKTRRYDFQKPII*
LPaug08P20500mDRAFT_c1021404LPaug08P20500mDRAFT_10214042F003514IYTCPYIICNRNKYNVSINYMSGEIMITPQEYNKLRQEELILNAAKSGGAVKSEMLHGSLFVTFTSGFVDVLSQNLKYVLEKLLDNTTVKMYNTTNNEYAYDFI*
LPaug08P20500mDRAFT_c1021817LPaug08P20500mDRAFT_10218171F063198LYIVRMRLEENSLISEDRLILNAPSKIRINRVKVVNTGAMEARSSGDVYPNPLGPIRNPSIIRNNTSGILVRRNNASDKKPKIAIKLNASNAVLTFIALR*
LPaug08P20500mDRAFT_c1021935LPaug08P20500mDRAFT_10219351F005516MKSFKGYLNEFVIQSTSDYVFDTMSNSISDIKIPISGPMFKRIWPDTIRATVFHSTDTEHLAGLKKLEGKKKSISAFFSMMSTQMEGGIATDGGVVVEMEADVLISAKDDIMSAVDKGGRRWVEMSWFENAQGRGNPVGFDKVEQGFNTLIK

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