Sample 3300000064

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300000064

3300000064: Bovine rumen microbial communities (NEW) from Vernon, TX, USA

Overview

Basic Information
IMG/M Taxon OID	3300000064 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0051259 \| Gp0053974 \| Ga0010805
Sample Name	Bovine rumen microbial communities (NEW) from Vernon, TX, USA
Sequencing Status	Permanent Draft
Sequencing Center	Texas A and M University
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	37196857
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bovine Rumen Microbial Communities (New) From Vernon, Tx, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Microbial Communities (New) From Vernon, Tx, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal proximal gut

Location Information
Location	Vernon, Texas, USA
Coordinates	Lat. (^o)	34.154	Long. (^o)	-99.264	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082826	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
RmDRAFT_c016605	All Organisms → Viruses → Predicted Viral	3420	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
RmDRAFT_c016605	RmDRAFT_0166054	F082826	MANKYTIEFNYNASIVVDVEGEFHDEGEALDKAREIAEDADINEFTIGEERESKILNVR*

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