| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2170459001 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0047452 | Gp0051901 | Ga0011276 |
| Sample Name | soil microbial communities from McMurdo Dry Valleys (Wright Valley), Antarctica |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of New Mexico |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 6261012 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Polar Desert Microbial Communities From Mcmurdo Dry Valleys, Antarctica |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Polar Desert → Polar Desert Microbial Communities From Mcmurdo Dry Valleys, Antarctica |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | polar desert biome → desert → permafrost |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | McMurdo Dry Valleys (Wright Valley), Antarctica | |||||||
| Coordinates | Lat. (o) | 77.4475 | Long. (o) | 162.676389 | Alt. (m) | N/A | Depth (m) | .1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000584 | Metagenome / Metatranscriptome | 1007 | Y |
| F008799 | Metagenome | 328 | Y |
| F066284 | Metagenome / Metatranscriptome | 127 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| W1_contig00354 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium | 2207 | Open in IMG/M |
| W1_contig00594 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei | 1619 | Open in IMG/M |
| W1_contig01448 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 937 | Open in IMG/M |
| W1_contig04542 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 503 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| W1_contig00354 | W1_0354.00000050 | F066284 | MRVDYDSTANAISIAISDTSHAEKADEVHSRAIVALAGGKPVEVQLLYPDLGISEPLAAVADRYELDLEALHAAARSALAAPDRVVVLEVAVRTPA |
| W1_contig00594 | W1_0594.00000010 | F000584 | MARKTHHKHSSTKGYRRLLDGLADLEGVHSVATGRVKPRMGSGRPVAPISKVRTTESGLSITINADGAIVDAYVVTDRPAEVAAAIAERGWSASS |
| W1_contig01448 | W1_0448.00000090 | F008799 | MATPLLRRLSTGNGWSHKVIHDAHGRLEAVTFVRVGPVWTDSVAIAGEDQTLAMRHRTRESDLIVPAELPSESRAVWQRHGRCADVLAELFELPAPAR |
| W1_contig04542 | W1_0542.00000290 | F008799 | VSGSSYPATPLLRRLTAGNGWRHDVIRDAHGRLEAVTYVRFGPVWTDSVAIAGEDQTLAMRHRTNDDRLILPTGLPSESRAVWRRHGRCADVLTELFELPDP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |