| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2100351001 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046158 | Gp0051725 | Ga0026450 |
| Sample Name | Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from low methane PC12-247-20cm |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 312796620 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 9 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 7 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment → Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine benthic biome → marine benthic feature → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 74.0678 | Long. (o) | -145.54687 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000057 | Metagenome / Metatranscriptome | 3033 | Y |
| F004192 | Metagenome / Metatranscriptome | 449 | Y |
| F020359 | Metagenome / Metatranscriptome | 224 | Y |
| F032659 | Metagenome / Metatranscriptome | 179 | Y |
| F032661 | Metagenome | 179 | Y |
| F078733 | Metagenome | 116 | Y |
| F095493 | Metagenome | 105 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| ASLM20b_contig00620 | Not Available | 704 | Open in IMG/M |
| ASLM20b_GJMWM0N02I1WLC | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 521 | Open in IMG/M |
| ASLM20b_GJMWM0N02INPK4 | Not Available | 525 | Open in IMG/M |
| ASLM20b_GM71RDO02GML28 | Not Available | 524 | Open in IMG/M |
| ASLM20b_GM71RDO02GYSXM | Not Available | 519 | Open in IMG/M |
| ASLM20b_GM71RDO02GZXGO | Not Available | 521 | Open in IMG/M |
| ASLM20b_GM71RDO02INIQL | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 537 | Open in IMG/M |
| ASLM20b_GM71RDO02IW3GQ | Not Available | 513 | Open in IMG/M |
| ASLM20b_GM71RDO02IZVWX | Not Available | 515 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| ASLM20b_contig00620 | ASLM20b_04567750 | F078733 | MGGLIHKFGLEFCLTSLEAQHSDYKNTIETKIRREEGVVYAEFSKGHPDIVAVEYDPSITTPDAIYKKIKRLNGGINRKVFL |
| ASLM20b_GJMWM0N02I1WLC | ASLM20b_05349080 | F032661 | MAENRKVKRRGYKTHTNFPAIDHRGNFIMSERRHRPTRRVCDVYAEDVDLPTMFLGIKKQ |
| ASLM20b_GJMWM0N02INPK4 | ASLM20b_05435770 | F004192 | MKNDFNEWMASIGNIYYADNELMSHAFEKLDNYEEVQCTKLHKI |
| ASLM20b_GM71RDO02GML28 | ASLM20b_00809630 | F020359 | MAVSKRTGGRKAPEEFWSKVLAAPKVKRILEKRGFSPEAFQRDYEADTSRGSRTPKRPSRSQIDAVEAFQRSGDFEALKRALSTDSSAVANSTLRRVVQFKALGGVKTVRRQSGA |
| ASLM20b_GM71RDO02GYSXM | ASLM20b_05215780 | F020359 | MAAQRKSGKKTSEEFWSKVLAAPKVKRILEKRGFDTEAFRRDYEADTSRGPRAPKRPSKQQMDAVEAFQRNGDFDALKSSLATESAAVANSALRRVLQFKA |
| ASLM20b_GM71RDO02GZXGO | ASLM20b_05590150 | F000057 | MASKLNSEFNYRYLVQGETVWEKIKTLKGFLEGRIRAAA |
| ASLM20b_GM71RDO02INIQL | ASLM20b_06948610 | F032661 | MPERRNVKRRRYKAHTYFPAIDHQGEFIVSDRRNLTTRRVCDVSVDDVDIPTMFLGINKQ |
| ASLM20b_GM71RDO02IW3GQ | ASLM20b_01174790 | F095493 | MKMKKWLRSVVPDLFLAAVVALVVTLAMNQLDGAETVRIRSDARGAAEDGLTLDERIDIFDGSIRRSTLLHLPALIALSGVVVGLTCRNRRWAWLTAIGSILPAVIMGVAFFADRPLPASFLVTAYSTLAVLMALAGSAFRQRFALARVPRG |
| ASLM20b_GM71RDO02IZVWX | ASLM20b_02196280 | F032659 | PEIAETKDEKKHVRENVLPTGKIEPETMQGRADVGDMPIAENLGTLARKVLSSSRHAQSRELARVVLDLLARRSGAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |