NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2088090007

2088090007: Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - from flow sorted anaerobic plus nitrate



Overview

Basic Information
IMG/M Taxon OID2088090007 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0060820 | Gp0051558 | Ga0026442
Sample NameFreshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - from flow sorted anaerobic plus nitrate
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size372237563
Sequencing Scaffolds19
Novel Protein Genes22
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available10
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon2
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium → unclassified Hyalangium → Hyalangium sp. H56D211
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → unclassified Chthoniobacter → Chthoniobacter sp. 12-60-61
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → freshwater lake → lake sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationLake Washington, Seattle, Washington, USA
CoordinatesLat. (o)47.63Long. (o)-122.27889Alt. (m)N/ADepth (m)62
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000388Metagenome / Metatranscriptome1201Y
F000926Metagenome / Metatranscriptome832Y
F007859Metagenome / Metatranscriptome343Y
F008688Metagenome / Metatranscriptome329N
F008881Metagenome / Metatranscriptome326Y
F010081Metagenome / Metatranscriptome308Y
F012759Metagenome / Metatranscriptome277Y
F013524Metagenome / Metatranscriptome270Y
F015489Metagenome / Metatranscriptome254Y
F023795Metagenome208Y
F027555Metagenome194Y
F032654Metagenome / Metatranscriptome179Y
F043810Metagenome155Y
F048060Metagenome / Metatranscriptome148Y
F048134Metagenome / Metatranscriptome148Y
F049443Metagenome146Y
F054519Metagenome / Metatranscriptome139Y
F072088Metagenome121Y
F080201Metagenome / Metatranscriptome115Y
F088668Metagenome / Metatranscriptome109Y
F096822Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
LWFCAnN_contig00384Not Available1213Open in IMG/M
LWFCAnN_contig00649Not Available970Open in IMG/M
LWFCAnN_contig00987All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon815Open in IMG/M
LWFCAnN_GO09JKT01A8EZ9Not Available515Open in IMG/M
LWFCAnN_GO09JKT01ASB6UAll Organisms → cellular organisms → Bacteria504Open in IMG/M
LWFCAnN_GO09JKT01B9F3ANot Available522Open in IMG/M
LWFCAnN_GO09JKT01BBDW3All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium → unclassified Hyalangium → Hyalangium sp. H56D21516Open in IMG/M
LWFCAnN_GO09JKT01BQZVFNot Available519Open in IMG/M
LWFCAnN_GO09JKT01C04O5All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium529Open in IMG/M
LWFCAnN_GO09JKT01C0PDEAll Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → unclassified Chthoniobacter → Chthoniobacter sp. 12-60-6505Open in IMG/M
LWFCAnN_GO09JKT01C500QNot Available519Open in IMG/M
LWFCAnN_GO09JKT01C7MH3Not Available524Open in IMG/M
LWFCAnN_GO09JKT01CUJ2TNot Available512Open in IMG/M
LWFCAnN_GO09JKT01DI086Not Available535Open in IMG/M
LWFCAnN_GO09JKT01DZGVLAll Organisms → cellular organisms → Bacteria521Open in IMG/M
LWFCAnN_GO09JKT01EOG8RNot Available556Open in IMG/M
LWFCAnN_GO09JKT01ET5ZOAll Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage567Open in IMG/M
LWFCAnN_GO09JKT02F00ZJAll Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon536Open in IMG/M
LWFCAnN_GO09JKT02F6GS1All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium527Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
LWFCAnN_contig00384LWFCAnN_06428220F015489MRPTCPHHCPGTVHLHGSYKRYADPEGSQEERIRRYLCSVCGLTLSVLPSHRLAYRPVRAERLQAYFDQRAGIQTKGLDPPPSIVEAGCLQRAWSALTARVTTLKEAFGQLMESKISEVASLWAGLRRASNSVPRMLCFLSEHHHISLLGNYRCLRPPA
LWFCAnN_contig00649LWFCAnN_01120030F000388MKVIKVTKEYFQTEDEKVYFFEPLEKEISVENMQKIVDANEKLVKELKDAKD
LWFCAnN_contig00987LWFCAnN_08746270F010081MKEQIDAIIKKHCLKMQEVDKNKSIPMTVKDLDHIVYDMYRELYGLRDIRASNYNLN
LWFCAnN_contig00987LWFCAnN_08746280F007859MKNLLIIALLCTGCTSGMYLRYSYNRALENLPPCSRIHAINNDYITYSMIKNSTNSVYTVYTNYYRAYYNCDGKITKIIKN
LWFCAnN_contig00987LWFCAnN_08746290F008688MNRFNKIIVGGLAAILLTAMTVEPPKIKVYLITSYRGNDLTIEKVYLKKENAEKYRDMYKDSHNYSVEERELTE
LWFCAnN_contig00987LWFCAnN_08746300F013524LRQFTSYNCNNLLDAKLCEDIRYLCDEVERFSKEIVKANNHMDEDHITIQRYKKKLSKYESI
LWFCAnN_GO09JKT01A8EZ9LWFCAnN_09636080F054519MDADLIALRDEIDARLSEVEQTRGTCSGHPALARAIGTLLRCQRAQLNQRAAHTVAAAKTGGIVGALLIGAIEAG
LWFCAnN_GO09JKT01ASB6ULWFCAnN_05290380F027555MVRLARRYGLSRVAQVLRVNYTGLKHHLVASSVPQAPRTDAIAAEFVEVPITVCPGSPQWVIELEDRDGSKLTLRLAQTDSAAALALAQGLWRQRS
LWFCAnN_GO09JKT01B9F3ALWFCAnN_04520300F012759MIYNKFITNFSHYGDILAIPFFALLVIYFYNIKHKSIIEYVLLCFSISGFILDILYTYIFLSNFNSSRV
LWFCAnN_GO09JKT01BBDW3LWFCAnN_09656380F088668VIEWDGSHVPEELRSLPPGRYAIESVDRVGALTEEEEAGILAGLTELDAGRGIPLADVVREIIRGGTSKR
LWFCAnN_GO09JKT01BQZVFLWFCAnN_07404540F048134MKTEKKIQINLAIPNHYRNLLRQMAAQRMMDNPDITVTGSSVATELLLAALKNAAGETNKEGGKL
LWFCAnN_GO09JKT01C04O5LWFCAnN_09228590F043810KETWQFELQNSKEIDVTLDIRRNFPGDWDLKTDAPHENVDAHKVKFVLPLTSRAKQKFTYELTTRLGTNATK
LWFCAnN_GO09JKT01C0PDELWFCAnN_05876940F096822KFGVLPSQEKDKPGGTTIVGGGPPALGAYTSSVAYILHREGGRGDDLRYLATVLDRYAWSEEGWWAATIDVKTGESKLPMTKPSPINKTAAMAMAAGILSDYVKDIAPALSSSLKRKTDKCIYDQIIPAQLADGFWHYGLNENDPKDKDVLGYFMLTTKELMNLQRFN
LWFCAnN_GO09JKT01C500QLWFCAnN_08563650F072088MKRIDALKGKLKAAKAELTIRYRQFNAAQRGLMRVLHNINQLEKKIEKTNLA
LWFCAnN_GO09JKT01C7MH3LWFCAnN_03627460F048060MWAALFKAILDWLTGLVKSQTGTAGEDVTAKPGLRERLDRRLAEWKAGRGGSPR
LWFCAnN_GO09JKT01CUJ2TLWFCAnN_04944330F023795MDNANLDRLRKIIKQLTLKNILKVDDWKKANQGCTEYNSRKNSQYLRINMEAIGPVDDAEVKRDFGKIIRRVAESTAIDKKYLMA
LWFCAnN_GO09JKT01DI086LWFCAnN_00510670F032654GCLNCPYKSTNMQNQFFYTRKELVSGTPENPEFKEFRDSFNVEKIVRTLTIDDGRVLVLLDDLHERSQEVPDIDVKTNKMKGVKRERNTFQSEIYLDPADAERFLKLTSIE
LWFCAnN_GO09JKT01DZGVLLWFCAnN_06772790F000926LELLVRTAVFKSATALVGRLLQQTVDRIDAAYQPKPTEVRKGRAVLSVQGIFGHFDLQRDYYYQAGQEQGHHPADATLGLEGSYTPALAKLMCLEGADATTYLQAERHLEQTGGITV
LWFCAnN_GO09JKT01EOG8RLWFCAnN_01608750F048060MWLALFTAILDWLTGLVQSQTRTAGEDGTAKPGLREALNKRLSTWKDRQGGV
LWFCAnN_GO09JKT01ET5ZOLWFCAnN_04900950F008881MKEVVCINDKNLPEGAAVVKGREYNVVEEFVNNYDQRVYIIEGIVNEGTTKMGLRWVGYDASRFAIPETLMEESYEHAYAEA
LWFCAnN_GO09JKT02F00ZJLWFCAnN_08481020F049443VNPLAAVKPVVVFNTNVVPVGGLTKLIDASKVAVELNPFNTNPLASCPAVDCRNDLESGADTLCPNPKNDVNKNNVTNICFILFNY
LWFCAnN_GO09JKT02F6GS1LWFCAnN_04820300F080201ICNNCGIVLDDTPTFESYTHWTPEWHSNWNEQDSETLKEWLTTLRTVSCQLNIPNFPYKEEAARTIRTQNHVLFRSQKLSKNKRVTVAALMYLVLKEYDKKRSIKEISKELSLDNKSVMKQAWIISKTLNGEKTQLKNQRKTSLDYLYENGGKITTNKDLIQSAEKTLMKIKRSG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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