x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy .
OK
Sample 2084038009
2084038009: Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - from flow sorted aerobic no nitrate
Overview
Basic Information
IMG/M Taxon OID 2084038009 Open in IMG/M GOLD Reference Gs0060820 | Gp0051557 | Ga0026399 Sample Name Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - from flow sorted aerobic no nitrate Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? Y Use Policy Open
Dataset Contents
Total Genome Size 396601732 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria 2 Not Available 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles Type Environmental Taxonomy Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles
Location Information
Location Lake Washington, Seattle, Washington, USA Coordinates Lat. (o ) 47.052 Long. (o ) -122.267889 Alt. (m) N/A Depth (m) 62 Location on Map
Zoom: - Reset +
Powered by OpenStreetMap ©
Associated Families
Family Category Number of Sequences 3D Structure?
F000388 Metagenome / Metatranscriptome 1201 Y F015489 Metagenome / Metatranscriptome 254 Y F096818 Metagenome 104 Y
Sequences
Scaffold ID Protein ID Family Sequence
LWFCA_contig00007 LWFCA_09678560 F000388 MKVIKVTKEYFQTEDEKVYFFEPLEKEISIEDMQKIVDANEKLVKELKDGTDTISK LWFCA_contig00620 LWFCA_00487740 F015489 MRPTCPHHCPGTVHLHGSYKRYADPEGSQEERIRRYLCSVCGLTLSVLPSHRLPYRPVRAERLQAYFDQRAGIQTKGLDPPPSIVEAGCLQRAWSALTARVTTLKEAFGQLMESKISEVASLWAGLRRASNSVPRMLCFLSEHHHISLLGNYRCLRPPA LWFCA_GLZZ6Z001BAB4D LWFCA_05592620 F096818 LACGAGRAAANRTTYPTGWPPFGVTDPRTLGPSKLIYWAKIGFEKWWLWR
