| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2077657018 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046212 | Gp0051826 | Ga0026315 |
| Sample Name | Marine sediment archaeal communities from Santa Barbara Basin, CA, that are methane-oxidizing, sample 0-3 cm |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 202177532 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis associated proteobacterium Delta 3 | 1 |
| Not Available | 4 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Sediment Archaeal Communities From Santa Barbara Basin, Ca, That Are Anaerobic And Methane-Oxidizing |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Archaeal Communities From Santa Barbara Basin, Ca, That Are Anaerobic And Methane-Oxidizing |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine benthic biome → marine benthic feature → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Santa Barbara Basin | |||||||
| Coordinates | Lat. (o) | 34.21 | Long. (o) | -119.5 | Alt. (m) | N/A | Depth (m) | to .03 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012457 | Metagenome | 280 | Y |
| F015930 | Metagenome | 251 | Y |
| F035021 | Metagenome / Metatranscriptome | 173 | Y |
| F039645 | Metagenome | 163 | Y |
| F064729 | Metagenome | 128 | Y |
| F085722 | Metagenome | 111 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| ASA120_GJFD58A02F0Z6Z | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 500 | Open in IMG/M |
| ASA120_GJFD58A02F5QAY | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis associated proteobacterium Delta 3 | 503 | Open in IMG/M |
| ASA120_GJFD58A02F8532 | Not Available | 521 | Open in IMG/M |
| ASA120_GJFD58A02GEM1U | Not Available | 518 | Open in IMG/M |
| ASA120_GJFD58A02GNMH4 | Not Available | 507 | Open in IMG/M |
| ASA120_GJFD58A02IVN3Y | Not Available | 513 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| ASA120_GJFD58A02F0Z6Z | ASA120_02355310 | F035021 | MLAIRVAVDDATCVPGLMRRLARLFDRSSISFDRSRREVRVESEWGSRSVVSVIDAVAGWLAEDGGSSATLSIGDRSYTLAGPTPLVRP |
| ASA120_GJFD58A02F5QAY | ASA120_04820600 | F039645 | MPTPITAFADAAAKYGDIDPNDIEAVQKWFAGELPKLPVDTIEQVLHDLLERDGTTAEREIVPIYPKRVPLPSLGSSPPALPPLLAEQWRTL |
| ASA120_GJFD58A02F8532 | ASA120_04831110 | F085722 | MKMIRNAMAGVCYALLVIGLNGCSNPHKEAARASTESSKAEASVHNEKAKILEDYRKCLNKNKSNEKACESYKRALDTM |
| ASA120_GJFD58A02GEM1U | ASA120_00223650 | F064729 | MGDLKEWLKYWRKVISKCSRIHKDSKAHKRAYSELSGYLNSVEESANDGELDATVLWAVRFMQRMHELEKEIGLHVLEKKVHSTHKEKEL |
| ASA120_GJFD58A02GNMH4 | ASA120_03770030 | F015930 | MIKKEYSEKDYWEGKVPDEKFDEYLKKYGYEYTPTDYNKIPKRY |
| ASA120_GJFD58A02IVN3Y | ASA120_03314190 | F012457 | MMIKDLEMSKDLDRDALSAVRGGGNSISQGGVYAPVANVDAGFSFASPTTIVSTPINAPTAVLNDNDLDLDIATKTANVLGSLGTLVAQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |