| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2077657008 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046183 | Gp0051758 | Ga0026431 |
| Sample Name | Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 7887 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 73827693 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema → unclassified Treponema → Treponema sp. | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal proximal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | University of Illinois Dairy Farm in Urbana, IL | |||||||
| Coordinates | Lat. (o) | 40.0886 | Long. (o) | -88.2202 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F036964 | Metagenome / Metatranscriptome | 169 | Y |
| F043727 | Metagenome | 155 | Y |
| F066313 | Metagenome | 126 | Y |
| F093002 | Metagenome | 106 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| BRPC1_contig00370 | Not Available | 1462 | Open in IMG/M |
| BRPC1_contig00636 | Not Available | 1189 | Open in IMG/M |
| BRPC1_contig01843 | Not Available | 707 | Open in IMG/M |
| BRPC1_contig01885 | All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema → unclassified Treponema → Treponema sp. | 716 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| BRPC1_contig00370 | BRPC1_01259690 | F093002 | MTEQEFDTQVWRRFDVVTTDTGIETTVMNVCFTTRSVRIYVKNAPPEWLPCKRIEKHTTRKGDTADEGTIIEELHNKLLAAEDRIVGLKNERQQLADKIGKNYLADILHAVNMIKEGMTEKKAKLAKVDSALTSIESILQRVNE |
| BRPC1_contig00636 | BRPC1_00158280 | F066313 | MKKKIKNWMGKNNMTFSAIAGETFTNAEVVYTHIGLVVFLIVLGLAGNY |
| BRPC1_contig01843 | BRPC1_01385490 | F043727 | MTNKEAIDRWAEQIIPAVFKAEDALQKAKPEWKEKLKNVNGENGALLARLYCEEIATIIVTQAADYEPDGTIPYDNDPCNVELPDDETTD |
| BRPC1_contig01885 | BRPC1_01095920 | F036964 | MINFLKIFFPGLMVTGALGSLILNIVVNRQDWPVSLQWLGATFLYTALLFRNK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |