| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2070309007 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045482 | Gp0051729 | Ga0011088 |
| Sample Name | EF-deduplicated data |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Illinois, Urbana-Champaign |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 90734374 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 6 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp. | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Wastewater Viral Communities From Wastewater Treatment Facility In Singapore |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Wastewater → Wastewater Viral Communities From Wastewater Treatment Facility In Singapore |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Singapore: Singapore | |||||||
| Coordinates | Lat. (o) | 1.332 | Long. (o) | 103.756 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000388 | Metagenome / Metatranscriptome | 1201 | Y |
| F002371 | Metagenome / Metatranscriptome | 566 | Y |
| F024534 | Metagenome / Metatranscriptome | 205 | Y |
| F029893 | Metagenome / Metatranscriptome | 187 | Y |
| F049316 | Metagenome / Metatranscriptome | 147 | N |
| F078624 | Metagenome / Metatranscriptome | 116 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| EF_consensus_for_cluster_18824 | Not Available | 516 | Open in IMG/M |
| EF_consensus_for_cluster_19209 | Not Available | 510 | Open in IMG/M |
| EF_consensus_for_cluster_30291 | Not Available | 504 | Open in IMG/M |
| EF_consensus_for_cluster_36879 | Not Available | 501 | Open in IMG/M |
| EF_consensus_for_cluster_40518 | Not Available | 504 | Open in IMG/M |
| EF_consensus_for_cluster_9978 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp. | 529 | Open in IMG/M |
| EF_singleton_cluster_11367 | Not Available | 524 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| EF_consensus_for_cluster_18824 | EF_00404250 | F000388 | MKVIKVTKEYFQTEDEXGFILRAFGKRISVEDMQKIVDANEKLXKEL |
| EF_consensus_for_cluster_19209 | EF_01858300 | F029893 | DSVSVAANSVSANVVAGQLYEFVPTGTKVTLSCTGSNTGLRATLIANIPVMNDQAINLQNRFPIIPDDIVFQGAVRACRIVLTARNTTAGALTFFWRIDVN |
| EF_consensus_for_cluster_30291 | EF_00122140 | F078624 | MKLCIHVRPRDDGQGWAVDVFDGRRAWTKTHLGESPLNKVEAHRLAHKLRDPKFNTARTK |
| EF_consensus_for_cluster_36879 | EF_02071440 | F049316 | VLDREADRKSKIIAEFTGKTLSAIYREALDMYFSHFVNNDLLSEVNEFLDKLYWQYKIDNPHIFTAIQFGNLADAAMMIAEAVKKLPQEPEAQKLIDEGMRLISILSK |
| EF_consensus_for_cluster_40518 | EF_00093220 | F029893 | MQDSVSVAANSVSANVVAGQLYEFVPTGTKVTLSCTGSNTGLRATLIANIPVMNDQAINLQNRFPIIPDDIVFQGAVRACRIVLTARNTTAGALTFFW |
| EF_consensus_for_cluster_9978 | EF_00934280 | F024534 | IDRINALPDVFMLASLVQFKYVQTISEPNDVXFVVGLAGGHQXFGEPSQYDKFMDKYLTWLEMRK |
| EF_singleton_cluster_11367 | EF_02445650 | F002371 | VLGVKKETRGGTRQGSGAKPKYNEQTKTVAFRCPLSKVDELKLIVKSKLSEWSVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |