| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2070309006 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045482 | Gp0051728 | Ga0011087 |
| Sample Name | AS-dedpulicated data |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Illinois, Urbana-Champaign |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 63808837 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp. | 2 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Wastewater Viral Communities From Wastewater Treatment Facility In Singapore |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Wastewater → Wastewater Viral Communities From Wastewater Treatment Facility In Singapore |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Singapore: Singapore | |||||||
| Coordinates | Lat. (o) | 1.332 | Long. (o) | 103.756 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000388 | Metagenome / Metatranscriptome | 1201 | Y |
| F024534 | Metagenome / Metatranscriptome | 205 | Y |
| F035220 | Metagenome / Metatranscriptome | 172 | N |
| F037226 | Metagenome / Metatranscriptome | 168 | Y |
| F043390 | Metagenome / Metatranscriptome | 156 | N |
| F060712 | Metagenome / Metatranscriptome | 132 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| AS_consensus_for_cluster_12251 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp. | 520 | Open in IMG/M |
| AS_consensus_for_cluster_1759 | Not Available | 553 | Open in IMG/M |
| AS_consensus_for_cluster_5075 | Not Available | 536 | Open in IMG/M |
| AS_singleton_cluster_11353 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp. | 520 | Open in IMG/M |
| AS_singleton_cluster_2293 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | 546 | Open in IMG/M |
| AS_singleton_cluster_26020 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium | 502 | Open in IMG/M |
| AS_singleton_cluster_5915 | Not Available | 531 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| AS_consensus_for_cluster_12251 | AS_01995420 | F024534 | VNQQFIDRIKALPDVFMLASLVQFKYVQTISEPNDVNFVXGLAGGYEVFGKTEQYKLFVDKYLTWLENR |
| AS_consensus_for_cluster_1759 | AS_02006890 | F037226 | XXXNNEPKVVVSDLFIDIYKNFNVVTQVDRMKQLSKKELYLLLTCCFDKHSDDDPVVKHNLLEFREEAMKIYAIQNDEETTDEVLLDLIXETGDKYIETDNIVDSKGNSLSEPLTKQEVRDAKIDIIDTDGN |
| AS_consensus_for_cluster_5075 | AS_01831660 | F000388 | MKVIKVMKEYFQTEDEKVYFFEPLEKXISVEDMQKIVDANGKLVKELKDAXILN |
| AS_singleton_cluster_11353 | AS_01451660 | F024534 | MKQQFIDRIDALPDVFMLASLVQFKYVQTISEPNDVNFVVGLAGGYEVFGTPEHYDKFIDKYLTWLETRKP |
| AS_singleton_cluster_2293 | AS_01301610 | F043390 | MIMGYMVKNEDSQKVITLTLTAEQLEVIDGALEMYCMGLAEQNDPHLKYATNAHEAIYNVLESNFGVEA |
| AS_singleton_cluster_26020 | AS_01496850 | F060712 | ITTLTDIANRALQVPGTRTTVTDAELAGNTTNEAIQINLVADSIRRQLIRMAPWDSALKTANLVYISSTPGTPENTSAATTLWQPGQPSPPWAYEYQYPVDCLRACWIIP |
| AS_singleton_cluster_5915 | AS_00145980 | F035220 | MDYYVPAGTIYLLHVPSLAWVDAKDWGFIEFEGSGPWRWMSGRDAFETTYGWYGNIAPLARNTHGSIVGYTDTDRYSHLV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |