NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2051223007

2051223007: Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10375



Overview

Basic Information
IMG/M Taxon OID2051223007 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045401 | Gp0051703 | Ga0011003
Sample NameHuman fecal microbial communities from Orebro University Hospital, Sweden - Sample 10375
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size41065261
Sequencing Scaffolds9
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationOrebro University Hospital, Sweden
CoordinatesLat. (o)59.274717Long. (o)15.230656Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032312Metagenome / Metatranscriptome180N
F044555Metagenome / Metatranscriptome154N
F050793Metagenome145N
F056623Metagenome137N
F060985Metagenome / Metatranscriptome132N
F064817Metagenome128N
F076064Metagenome118N
F077320Metagenome117N
F080163Metagenome115N
F092228Metagenome107N
F094005Metagenome / Metatranscriptome106N
F101193Metagenome102N
F101357Metagenome / Metatranscriptome102N
F105375Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
mhc6b_MHC6B_contig01984All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii10568Open in IMG/M
mhc6b_MHC6B_contig02440All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii2028Open in IMG/M
mhc6b_MHC6B_contig06257All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii2108Open in IMG/M
mhc6b_MHC6B_contig24408All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales542Open in IMG/M
mhc6b_MHC6B_contig24805All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales823Open in IMG/M
mhc6b_MHC6B_contig28395All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1044Open in IMG/M
mhc6b_MHC6B_contig31135All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales817Open in IMG/M
mhc6b_MHC6B_contig33558All Organisms → Viruses → Predicted Viral1541Open in IMG/M
mhc6b_MHC6B_contig35301All Organisms → cellular organisms → Bacteria25737Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
mhc6b_MHC6B_contig01984MHC6B_contig01984_metagene_gene_5F092228MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVKLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPAKIAGKCDCDELLATKNFLYCYTINYILPRGLANSWVKGYLIDQLAIS
mhc6b_MHC6B_contig02440MHC6B_contig02440_metagene_gene_4F076064LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLSRLFSARRQIRLCAPDLKRRNETRRHPMPVLKLY
mhc6b_MHC6B_contig06257MHC6B_contig06257_metagene_gene_1F105375FQTTQHLNKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENHLALSAMISKQDGFAIYSFLFQTPDTSKGAADALVNFAMNFTDGEANIKSINKISSNIMQITFTV
mhc6b_MHC6B_contig06257MHC6B_contig06257_metagene_gene_3F101357MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYNYSNTSNIHYEGGKFPSMLTIQLFNLEF
mhc6b_MHC6B_contig24408MHC6B_contig24408_metagene_gene_1F077320MVGIAVWRIWQTPRPVVLHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGRLLYIRDYSASGHYQIVWEGVSAEAAESYLTALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEEPTTTPLP
mhc6b_MHC6B_contig24805MHC6B_contig24805_metagene_gene_1F056623RGAGAPDQRNRPARRQLLHLLYAREAAALQSMTLVRAEIPAAQKRDWKPLIFPFAAAVLNLGALALWLTLPSCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
mhc6b_MHC6B_contig28395MHC6B_contig28395_metagene_gene_1F101193MARKCTEYHYFQHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLVPIEFVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPHYIYVRFFMPYETLSEDETQKFRDLQEH
mhc6b_MHC6B_contig31135MHC6B_contig31135_metagene_gene_2F050793MRKQVLVPENVEMADIHAIPKRASKKHNLLTVVLLIPLFAGCALRESHETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDSLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYATQEGYEPMDVDFGQMTDEEFQQFLDAHRI
mhc6b_MHC6B_contig33558MHC6B_contig33558_metagene_gene_1F064817MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAVKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQYNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
mhc6b_MHC6B_contig35301MHC6B_contig35301_metagene_gene_2F044555MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
mhc6b_MHC6B_contig35301MHC6B_contig35301_metagene_gene_5F080163MKTIKFLQESFQQEISFKYSYNRDTIESVDLRINRHNIRSFYEAMQNFENSLVDEFKEKKTNFCNAKQFLESISDFDKIIFVIITYMKTYFDFCKDSSKISLHVHLVQFDFTTSVLIQGFYNYNHRDLSFSTKLKREVLDSEIELLQEKLDLIREEICELIGVDTDLQKKGMKKIIFSI
mhc6b_MHC6B_contig35301MHC6B_contig35301_metagene_gene_6F060985MKKAKNDFTIEIRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFPSGFSFMGYGEYHTIRGNRWLKTPIDKIDKEDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD
mhc6b_MHC6B_contig35301MHC6B_contig35301_metagene_gene_7F032312MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
mhc6b_MHC6B_contig35301MHC6B_contig35301_metagene_gene_8F094005MEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
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