| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2046860001 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046156 | Gp0051671 | Ga0010974 |
| Sample Name | Concrete drainage pipe biofilm microbial communities from Ohio, US - sample 12382 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | 454 Life Sciences |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 240235330 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → unclassified Sphingosinicellaceae → Sphingosinicellaceae bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Concrete Drainage Pipe Biofilm Microbial Communities From Ohio, Us |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Storm Water → Drainage Pipe Biofilm → Concrete Drainage Pipe Biofilm → Concrete Drainage Pipe Biofilm Microbial Communities From Ohio, Us |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → artificial channel → biofilm material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Surface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.8 | Long. (o) | -84.3 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000952 | Metagenome / Metatranscriptome | 822 | Y |
| F002967 | Metagenome / Metatranscriptome | 517 | Y |
| F007832 | Metagenome / Metatranscriptome | 344 | Y |
| F012112 | Metagenome / Metatranscriptome | 283 | Y |
| F032912 | Metagenome / Metatranscriptome | 178 | Y |
| F046787 | Metagenome | 150 | Y |
| F052717 | Metagenome / Metatranscriptome | 142 | Y |
| F072535 | Metagenome / Metatranscriptome | 121 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| MiccSOB_F3TY2AH01ATZ1Z | Not Available | 505 | Open in IMG/M |
| MiccSOB_F3TY2AH01B8C23 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 516 | Open in IMG/M |
| MiccSOB_F3TY2AH02GZCRJ | Not Available | 537 | Open in IMG/M |
| MiccSOB_F3TY2AH02H3F68 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 514 | Open in IMG/M |
| MiccSOB_F3TY2AH02HH9PU | Not Available | 517 | Open in IMG/M |
| MiccSOB_F3TY2AH02HN2VN | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 545 | Open in IMG/M |
| MiccSOB_F3TY2AH02IKASR | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → unclassified Sphingosinicellaceae → Sphingosinicellaceae bacterium | 539 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| MiccSOB_F3TY2AH01ATZ1Z | MiccSOB_9867890 | F002967 | VSTTVWLSPSATSFACLCETCLEAARTGGALFADALRAASVRGNVDADAPRSIVRCGAGHEIVLQRGERPPGLSRRDERQLQLT |
| MiccSOB_F3TY2AH01B8C23 | MiccSOB_12461660 | F012112 | MANVTITQLPQAAPITGSELVPVVQNGVTVQTTTGAIAAAPAQSQTFLTLNQETTLPNSRYLSVGTGLGLADGG |
| MiccSOB_F3TY2AH01CV7VD | MiccSOB_2057770 | F032912 | MVGRGTFTLHPKVTAVSATSATVVDCAYSTAELIYKATGKPVPPVTPPENDGVTSTLVLSGGTWKV |
| MiccSOB_F3TY2AH02GZCRJ | MiccSOB_7808480 | F000952 | MATSDQEQRSVNVPQHKRLAMGEKLNGTSYGAKDSDSRAKPSKPAGGLSHVKSKK |
| MiccSOB_F3TY2AH02H3F68 | MiccSOB_99650 | F072535 | FALSLLGLMRMESKNFDESIAMADYDNATRKASSLDIAKPSLSIRH |
| MiccSOB_F3TY2AH02HH9PU | MiccSOB_15450370 | F007832 | VLFLADIFPGGGGPLADVFSLVLAVAMFALLYWLVGLIDRI |
| MiccSOB_F3TY2AH02HN2VN | MiccSOB_1319040 | F052717 | MSMTVWEWFEQRSYSHGEFADLARAGGNGSRRPSTTLIFPARNVAGTIGTILSV |
| MiccSOB_F3TY2AH02IKASR | MiccSOB_6395940 | F046787 | VTAPSLSRLASPCYAHSMSESDKPLRQQIDDAMAAIRKQIERLREGPTMGGPSDDRSVIADLQAEYQALAEVRTNLPPHDHPSDHPDDATPA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |