| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2044078005 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045634 | Gp0051613 | Ga0011097 |
| Sample Name | Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Illinois, Urbana-Champaign |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 18598591 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Switchgrass, Maize And Miscanthus Rhizosphere → Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → rhizosphere → bulk soil |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | UIUC Energy Farm, Urbana, Illinois 61801 | |||||||
| Coordinates | Lat. (o) | 40.109 | Long. (o) | -88.204 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001437 | Metagenome / Metatranscriptome | 695 | Y |
| F002176 | Metagenome | 587 | Y |
| F007449 | Metagenome / Metatranscriptome | 351 | Y |
| F080568 | Metagenome / Metatranscriptome | 115 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| PVB_F548DK201DY66L | All Organisms → cellular organisms → Bacteria → Acidobacteria | 500 | Open in IMG/M |
| PVB_F5IW0KN15I7Z7K | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 512 | Open in IMG/M |
| PVB_F5IW0KN16JRWJA | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 503 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| PVB_F548DK201DY66L | PVB_312060 | F002176 | ASVNGIGGRYEPEAWRDDPQFEGEPSSREQCRLLDLLGRINYRILSGNRVYVEVGGVVYKTVYGGYWRSVFTGIEHYLLHCEQVSSAVWKEEKSTAVDLPIAYSKGGWTTKGHSLSFILNRDQ |
| PVB_F548DK201E0ARC | PVB_780540 | F080568 | VHTYGYAAGSEVPIFSKAYTTAGTLALGTQERCPGDCAGLIRYATTARTSKNHPVYLFNYYHGVVAVGASFDDVGAVQASAYSTYAGLWIAGFSDGATTYNRAGPNGASAVGSLVEPYITHRDLPR |
| PVB_F5IW0KN15I7Z7K | PVB_521450 | F007449 | VKDPDAFQWRDIVLTNREILSASLDLFARRIDELRERLGSRDLEADFDAANELYKLLR |
| PVB_F5IW0KN16JRWJA | PVB_479240 | F001437 | LDGRVLFRLETADGSPASPSTLKSAVPNWRAGDVISLGHRALRVVGKRDDDADQPPVLVVEEAV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |