| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2027040003 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045482 | Gp0051553 | Ga0011134 |
| Sample Name | Viral communities in wastewater treatment process (AS-no assmebly) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Illinois, Urbana-Champaign |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 134666693 |
| Sequencing Scaffolds | 11 |
| Novel Protein Genes | 11 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium | 1 |
| Not Available | 6 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → unclassified Acidovorax → Acidovorax sp. Leaf73 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Helicobacteraceae → Helicobacter → Helicobacter pylori | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Wastewater Viral Communities From Wastewater Treatment Facility In Singapore |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic) → Activated Sludge → Wastewater → Wastewater Viral Communities From Wastewater Treatment Facility In Singapore |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Singapore: Singapore | |||||||
| Coordinates | Lat. (o) | 1.332 | Long. (o) | 103.756 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000388 | Metagenome / Metatranscriptome | 1201 | Y |
| F003622 | Metagenome / Metatranscriptome | 476 | Y |
| F023334 | Metagenome / Metatranscriptome | 210 | Y |
| F043390 | Metagenome / Metatranscriptome | 156 | N |
| F045749 | Metagenome / Metatranscriptome | 152 | Y |
| F051532 | Metagenome / Metatranscriptome | 144 | Y |
| F060712 | Metagenome / Metatranscriptome | 132 | Y |
| F071210 | Metagenome / Metatranscriptome | 122 | N |
| F082381 | Metagenome | 113 | Y |
| F083928 | Metagenome | 112 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| ASn_FUOFX6F01A0NS8 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium | 502 | Open in IMG/M |
| ASn_FUOFX6F01A1I4B | Not Available | 530 | Open in IMG/M |
| ASn_FUOFX6F01B04ZT | Not Available | 502 | Open in IMG/M |
| ASn_FUOFX6F01B6020 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → unclassified Acidovorax → Acidovorax sp. Leaf73 | 510 | Open in IMG/M |
| ASn_FUOFX6F01BF9Y3 | Not Available | 517 | Open in IMG/M |
| ASn_FUOFX6F01C2L4K | Not Available | 511 | Open in IMG/M |
| ASn_FUOFX6F01DB6R3 | Not Available | 504 | Open in IMG/M |
| ASn_FUOFX6F01DK2PF | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Helicobacteraceae → Helicobacter → Helicobacter pylori | 518 | Open in IMG/M |
| ASn_FUOFX6F02GCJQ9 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii | 501 | Open in IMG/M |
| ASn_FUOFX6F02GOIP1 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | 546 | Open in IMG/M |
| ASn_FUOFX6F02JUO78 | Not Available | 547 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| ASn_FUOFX6F01A0NS8 | AS_na_2588140 | F060712 | ITTLTDIANRALQVPGTRTTVTDAELAGNTTNEAIQINLVADSIRRQLIRMAPWDSALKTANLVYISSTPGTPENTSAATTLWQPGQPSPPWAYEYQYPVDCLRACWIIPATQ |
| ASn_FUOFX6F01A1I4B | AS_na_979160 | F045749 | RFLCDVWAHTNESELFDYFGGRDAASDYFEMLFSESEKHAGALKTYLLNHKISEDFKPQGRAPDTESRKQMIQAAISPEHCLVEDLINKHECGVINGLVLDVTWLAKQCEIDGEMLPPTRTLAHILNDMGYQQIEGRRLKIQKTGNYHYIWHKNTRNNSSEDVKNIIRDFYKNNLD |
| ASn_FUOFX6F01B04ZT | AS_na_397120 | F023334 | NLVTPLLAQLEKAKAGGPKNLRWGGNNVYWDVVVGRPSGSTFSSIGYFPPDTTATERQANVGVVRAYTTRQIDGLAFVGTQSKQAAFETIARKTMDEIKDASRLLMQQALHNKANGVVALVTTVNSTTSIDVGSPYAISGAGQGALLISVGDTIAVLDTSGADAVLG |
| ASn_FUOFX6F01B6020 | AS_na_1350400 | F083928 | MNFLTYLNGLRPAIPMSMEKPTTVMSNGELRRHIEQGGVLVNGEKAAVNEEIDFPVFSLIFFPASKRRRTTLV |
| ASn_FUOFX6F01BF9Y3 | AS_na_1464130 | F071210 | MKEKRWLGTQKYELHCFYCGGFHITGNCPQIVKEMNGWKYDRSCPETGHIKIVPNGDEYPTVLAFNGYHYRVVGLWGVPGKLLWLELQRFYGDTIVAATFCPDELMEMDLGMSDDEQLSAWLGGLPFLSVSPPEF |
| ASn_FUOFX6F01C2L4K | AS_na_2435650 | F082381 | MGKENIKLKRGGKRPFSGRKKADYQTKTIAFRVRVQWVEAIKSMVKDKIADLSQKCS |
| ASn_FUOFX6F01DB6R3 | AS_na_773710 | F045749 | FGGRDAASDYFEMLFSESEKHAGALKTYLLNHKISEDFKPQGRAPDTESRQQMIQAAISPEHCLVEDLINKHECGVINGLVLDVTWLAKQCEIDGEMLPPTRTLAHILNDMGYQQIEGRRLKIQKTGNCHYIWHKNTRNNSSEDVKNIIRDFYKNT |
| ASn_FUOFX6F01DK2PF | AS_na_921880 | F051532 | EEELAEDIMKILTCYSARYYGARGGRKKKIKIENEPVESNGI |
| ASn_FUOFX6F02GCJQ9 | AS_na_2602980 | F003622 | MRSYKNELEAIANDLLTQNAEAKGNENKPNYSNRDFMNATIIFQTALMDKMYDNQDYDGMSMDDRMKMAESCGLALRKLIHTYTGLDTHKIEEFL |
| ASn_FUOFX6F02GOIP1 | AS_na_1575940 | F043390 | MGYMVKNEDSQKVITLTLTAEQLEVIDGALEMYCMGLAEQNDPHLKYATNAHEAIYNVLESNFGVEA |
| ASn_FUOFX6F02JUO78 | AS_na_2157540 | F000388 | MKVIKVMKEYFQTEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKELKKWEKHTQIENQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |