| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2021593000 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045377 | Gp0051355 | Ga0011034 |
| Sample Name | Sample 264 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 58118889 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Tigriopus Californicus Microbial Communities From Ocean Beach, California, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Arthropoda → Unclassified → Unclassified → Unclassified → Tigriopus Californicus → Tigriopus Californicus Microbial Communities From Ocean Beach, California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal corpus |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Ocean Beach pier, California | |||||||
| Coordinates | Lat. (o) | 32.7497 | Long. (o) | -117.2574 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000044 | Metagenome / Metatranscriptome | 3572 | Y |
| F001587 | Metagenome / Metatranscriptome | 667 | Y |
| F034188 | Metagenome / Metatranscriptome | 175 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| TM1208_contig15775 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea | 1059 | Open in IMG/M |
| TM1208_contig48096 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda | 541 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| TM1208_contig15775 | TM1208A_657050 | F034188 | VPLLKPSEECVDIPKEVCSRSRKNPRKVQKPVVKKWCYVPSEQSGLA |
| TM1208_contig48096 | TM1208A_228200 | F001587 | MNHLAPLSMSRNNPGKFVGDTRCEKLPVEILWVPGCVTEEGPEECHDKTITSLLDVPEEACDLNPQKTCRFQTKLVPKLEPKHECTIIPQETCNLKFTSPQQVEKPLKTKWCQDPTSPTPDETYDESTAIAPPIQFPQ |
| TM1208_contig76008 | TM1208A_18780 | F000044 | SIDFSQAQFDEESGKRCVIKDEEVQSIEKEPILECNHKDVEKCHYTYVTEFKPAQEEVCEENFEKSCQITFKQQAVEENVRKCYKPLEKVCNGQGPEECRTVYESSCTTKYVEKQPGKFVGDTKCEKLPIEICGAGCVTEEGPEECHDKTVTSLLDVPEEVCDLNPQKTCRFQTKLVPSLSPKHECTIIPQEICNLKFTSPKLVNKPLKTKWCLDESPIVPDETYDESNAGAAPIGGIGIRAQGSNNIPTYVENPFTSNQSQQQYQTA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |