| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2020627000 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045482 | Gp0051391 | Ga0011176 |
| Sample Name | Viral communities in wastewater treatment process (EF) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Illinois, Urbana-Champaign |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 30035399 |
| Sequencing Scaffolds | 13 |
| Novel Protein Genes | 13 |
| Associated Families | 13 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum magneticum | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae | 1 |
| All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin012 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Wastewater Viral Communities From Wastewater Treatment Facility In Singapore |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Wastewater → Wastewater Viral Communities From Wastewater Treatment Facility In Singapore |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Singapore: Singapore | |||||||
| Coordinates | Lat. (o) | 1.332 | Long. (o) | 103.756 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000388 | Metagenome / Metatranscriptome | 1201 | Y |
| F002371 | Metagenome / Metatranscriptome | 566 | Y |
| F010914 | Metagenome / Metatranscriptome | 297 | Y |
| F023098 | Metagenome / Metatranscriptome | 211 | Y |
| F029893 | Metagenome / Metatranscriptome | 187 | Y |
| F033445 | Metagenome / Metatranscriptome | 177 | N |
| F049316 | Metagenome / Metatranscriptome | 147 | N |
| F060712 | Metagenome / Metatranscriptome | 132 | Y |
| F078624 | Metagenome / Metatranscriptome | 116 | N |
| F078696 | Metagenome / Metatranscriptome | 116 | N |
| F082354 | Metagenome | 113 | Y |
| F082719 | Metagenome / Metatranscriptome | 113 | Y |
| F095393 | Metagenome | 105 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| VrWwEF_contig01699 | Not Available | 638 | Open in IMG/M |
| VrWwEF_contig01879 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum magneticum | 2662 | Open in IMG/M |
| VrWwEF_contig06887 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium | 763 | Open in IMG/M |
| VrWwEF_contig13989 | Not Available | 516 | Open in IMG/M |
| VrWwEF_contig18490 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae | 1320 | Open in IMG/M |
| VrWwEF_contig33657 | All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 500 | Open in IMG/M |
| VrWwEF_contig44186 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin012 | 786 | Open in IMG/M |
| VrWwEF_contig47465 | Not Available | 500 | Open in IMG/M |
| VrWwEF_contig51883 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1023 | Open in IMG/M |
| VrWwEF_contig53653 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium | 772 | Open in IMG/M |
| VrWwEF_contig54003 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium | 925 | Open in IMG/M |
| VrWwEF_contig54305 | Not Available | 2618 | Open in IMG/M |
| VrWwEF_contig56203 | Not Available | 1368 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| VrWwEF_contig01699 | EF_385090 | F000388 | MKVIKVTKEYFQTEDEKVYFFEPLEKEVSIEDMQKIVDANEKLVKELKDYAIHGK |
| VrWwEF_contig01879 | EF_735380 | F095393 | MKQSKKQIAECEQELKNRCIECSNFNKKKGECLKHGFVPVEFIYQKNDCLDYDWLPF |
| VrWwEF_contig06887 | EF_751030 | F060712 | MTTPTDIANRALQVIGTRTTVTDAELANNSTNEAIQINLVYDVIRRRLIRMAPWNCVLKTANLVYITSLPGTLENSSQVSVGQTWAPGLPSPPWSYEYQYPVDCVYAAWIPP |
| VrWwEF_contig13989 | EF_949320 | F033445 | MGKTLLNPRRIALNLLLVSIIWATPLQANDICFTEPDASKIVVELEKGRICEQEVIQYESSVKELSMQIESLKTQVETMSKKFDETMKQLETERKIASEKDKAR |
| VrWwEF_contig18490 | EF_951720 | F078696 | LNIQPSDAWQLTPKLFWSLWDMHLDKMEQSTGKAYTRPMRKTEFEELNDFLDSIHGNN |
| VrWwEF_contig33657 | EF_305720 | F082354 | IKSKVFRLKEAKEVTKGASLPKGQEIEIVMDVVYVNGNMVPPSMQPLFYEFVTKNPSFFEDDTRSW |
| VrWwEF_contig44186 | EF_361660 | F023098 | NKDGACGMDERRQNWTCEAHHELVASLRDINNKLDGMIERQIAYAETSARIEEKQESIERIVTNGLSHNVANISKRLDIFCDEVKKRLDELEEFQWFRLPITRLRDSIFWYLFKIAAAGGCFI |
| VrWwEF_contig47465 | EF_903470 | F049316 | KRITTIVLDREADRKSKIIAEFTGKTLSAIYREALDMYFSHFVNNDLLSEVNEFLDKLYWQYKIDNPHIFTAIQFGNLADAAMMIAEAVKKLPQEPEAQKLIDEGMRLISILSK |
| VrWwEF_contig51883 | EF_745280 | F010914 | MIYKILIEQNGKFVDLGETIECEFEQTQEIIDALQLEHGCCCALEAVSE |
| VrWwEF_contig53653 | EF_298520 | F078624 | MKLCIHVRPRDDGQGWAIDVYDGRRAWTKTHLGESPLNKAEAHRLAHKLRDPKFYTARTKRVVNSGGVR |
| VrWwEF_contig54003 | EF_06120 | F002371 | MKLQPKNKQETRGGTRQGSGAKPKYKEETKTVAFRCPLSKVDELKIVVKSKLSEWSVK |
| VrWwEF_contig54305 | EF_593540 | F082719 | MRTQDYITLVRQNNKAIWDGINNLVALQREWNALDYGNTLGDGEGENGGVTAAEVGAVTFDTANAFVTVLGSGHATNMAKLL |
| VrWwEF_contig56203 | EF_395120 | F029893 | MPVMQDSVSVAANSVSANVVAGQLYEFVPTGTKVTLSCTGSNTGLRATLIANIPVMNDQAINLQNRFPIIPDDIVFQGAVRACRIVLTARNTTAGALTFFWRIDVN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |