NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2013843002

2013843002: Groundwater dechlorinating microbial communities from synthetic mineral medium in Toronto, Ontario, Canada - Site contaminated with chlorinated ethenes



Overview

Basic Information
IMG/M Taxon OID2013843002 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0056622 | Gp0051212 | Ga0026387
Sample NameGroundwater dechlorinating microbial communities from synthetic mineral medium in Toronto, Ontario, Canada - Site contaminated with chlorinated ethenes
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size29947996
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameEnriched Contaminated Groundwater Dechlorinating Microbial Communities From Synthetic Mineral Medium In Toronto, Ontario, Canada (Kb-1)
TypeEngineered
TaxonomyEngineered → Bioremediation → Tetrachloroethylene And Derivatives → Chloroethene → Bioreactor → Enriched Contaminated Groundwater → Enriched Contaminated Groundwater Dechlorinating Microbial Communities From Synthetic Mineral Medium In Toronto, Ontario, Canada (Kb-1)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationToronto, Ontario
CoordinatesLat. (o)43.449776Long. (o)-80.489086Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091988Metagenome / Metatranscriptome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
DCKB1_C5928All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae1438Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
DCKB1_C5928DCKB1_189800F091988XXXXXXXXXXXXAQASQDALTLTLTMSGVDYEEKVSNFRATGFEKLVCNPYIVAKEPVSVMFQAYEVKAGNPTQVVYTYSLKGSTTSELTLTMDWTIGPCAPAYDESNVKAQRNPLLTTYHFEFKVPVK

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