NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334905_000031

Scaffold Ga0334905_000031


Overview

Basic Information
Taxon OID3300034687 Open in IMG/M
Scaffold IDGa0334905_000031 Open in IMG/M
Source Dataset NameSoil microbial communities from Mojave Desert, California, United States - 1NOC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22636
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (52.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015476Metagenome / Metatranscriptome254Y
F090727Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0334905_000031_6725_7039F090727N/AVAGELALDASVGGGGARHYERAVSRFARFLQLRAPAGTRLPGSTDEALVAGIVGLVGDHIRLDRLDRLADLRPELVLLTLLPYLGFAEAQRWANEMARSRPEDD
Ga0334905_000031_9595_10014F015476GAGMRESCLISFSVSFATVGRIVCAHRMDVLRNLFGNLSAGIIRLLVTLGILAGVYFFVVRPALDTTEKISHEVNVNVQKGFEQTDLGDINKTIDDVNRRVQREVRKSFRQSQNHGGAKKLVRCIQRAHQDVHKIQRCSEKY
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