NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335048_0083496

Scaffold Ga0335048_0083496


Overview

Basic Information
Taxon OID3300034356 Open in IMG/M
Scaffold IDGa0335048_0083496 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1959
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001433Metagenome695Y
F017801Metagenome238N

Sequences

Protein IDFamilyRBSSequence
Ga0335048_0083496_1100_1714F001433AGGMAEKLNANDTLSKVLAYVDSPFKLFALILMAVLAFGGWMLYDNKDLIVGTYKEHQKLPDIVEDRVEDAVAHLFKTTGATTVAVFKVNPLLGTRVQYRAYTKEGRDKTNDGLDVGLFTANQANNQDVVALMAGTIPCGEYKAAQSEIGLWYIEKGMRFGCRISVPPEPSRFVGQITVGWATPPADLDQTKAMLNIAATMLSRSKK
Ga0335048_0083496_642_1100F017801AGGVSDLDPIISTAKAATKSIKSAIESGKEISSAVESIQNFGMAEVKARHAFKTVRKSSEGEITIMTAMSEWRRLDQIRRMELEVRDFLIQQFGEFKGLEEFEKVKKIKEDMMARHAKSKDALGRDVKKLRDLQIMCVTIAFLLVTIYYIAKGHL
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