| Basic Information | |
|---|---|
| Taxon OID | 3300034284 Open in IMG/M |
| Scaffold ID | Ga0335013_0003824 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11705 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (79.49%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000325 | Metagenome / Metatranscriptome | 1296 | Y |
| F008812 | Metagenome / Metatranscriptome | 327 | Y |
| F035281 | Metagenome / Metatranscriptome | 172 | Y |
| F057320 | Metagenome / Metatranscriptome | 136 | Y |
| F061803 | Metagenome / Metatranscriptome | 131 | Y |
| F086678 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335013_0003824_129_833 | F000325 | AGGAG | MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDTLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKVAPKRPKSKAKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH |
| Ga0335013_0003824_1417_1647 | F086678 | GAGG | MAKYYIKCGTLELIYSCNKCPRDAAMDAIWETNENDTLDEHFYIDERGYRDYTNADGHTCVLHTTHILKDAGWSIE |
| Ga0335013_0003824_1996_2355 | F008812 | GAGG | MIQWVGILITILGLAYTGVKDYQKGDIKFPPMPQKPALTKVVYPVQYCLMAYDPNVDKVFYLHENGQWHDYAPQQRRYETTPQPYQAQGSTAVAGSYGSQGTPSYRYGQSPQASTNPIR |
| Ga0335013_0003824_6066_6209 | F061803 | GGAGG | MQIDINKQEAWKLIDAVKAYLKDYTLTGQVHKTFDSITKKLKEVVKE |
| Ga0335013_0003824_8362_8577 | F035281 | AGGAG | MMKFAFVFALMVLGSSAYAGECVNGNCTLRSRVVNVTQEVISVPVTLTRRTVEATRNVGRRTVARVRSVVR |
| Ga0335013_0003824_845_1414 | F057320 | AGGA | MSYVGLYDDAGSKNAFYIIKDKKINRKRVGFKEFENEQEAKFAHRVQSHLAQFDLAPMVYGDVGMIRRYDGELTAYGYLTEVARTMPECHDEDCDGECFQSECKNGTTICELVYDLGEHGLEYNDSHKGNFGYVRRKGSWVPVVIDLGIESFTDWDEDIYGKFDYDADEDIDSYGACNCVHCQQFRDRG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |