NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0271211

Scaffold Ga0335007_0271211


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0271211 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1130
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048833Metagenome / Metatranscriptome147Y
F068593Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0271211_3_530F068593AGGAMTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRCYANFVPQARQGFATGTTFTYRGYTALNAGTTAGGAMEKLQTVLNSGVLEISFAQKLYYQIARPFIQCPAGFGIDIQSLASTRTGVAAET
Ga0335007_0271211_571_1128F048833N/AQDTNLPKAGSFGQTHFQLKSISTDIQINDNNVDTFTRANIADIDTHATATDYLGGFVQAGVLNFSVGARPFATIVKPFQYAPPPGSPLDLENSYVNQIGAVPTATGGANQVVGVPWVSQTKMRSNVYFTDPNILIEAEQQFNVSIQFPSGAVPVLATSVTNIGGANANPYKIGVILDGLLLRPVQ
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