| Basic Information | |
|---|---|
| Taxon OID | 3300034281 Open in IMG/M |
| Scaffold ID | Ga0370481_0000312 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_15 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15473 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (42.11%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Alaska | |||||||
| Coordinates | Lat. (o) | 64.9141 | Long. (o) | -147.8344 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029425 | Metagenome | 188 | Y |
| F031313 | Metagenome / Metatranscriptome | 183 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0370481_0000312_10069_10242 | F031313 | N/A | MASKKRGTSASARQPKDAVPGDETVRVPQDFINGTEFKSIDFGTGYKLVMGWRKALN |
| Ga0370481_0000312_2882_3052 | F031313 | N/A | MSKKQGTSASARQPKDAVPGDETVRVPKYFINGLEFKSIDFEAGYKAVLGWRKAIN |
| Ga0370481_0000312_6277_6420 | F029425 | AGG | LADSAKDTVPGDETVRVPQDFISGTEFKGIDVGYVYKSVLGWLKAIN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |