NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370481_0000003

Scaffold Ga0370481_0000003


Overview

Basic Information
Taxon OID3300034281 Open in IMG/M
Scaffold IDGa0370481_0000003 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)348050
Total Scaffold Genes283 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (18.02%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9141Long. (o)-147.8344Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042098Metagenome159Y
F080676Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0370481_0000003_103855_104730F042098N/AMKKIIYFSTMALLCVPGINAQESKPAEQYKVPAAYHFDYKVVYEMDREEKKAPETMSYYFTKNGEYMSMETPKSNEDADKNFMVSTKDGLMITFGEEPVPKSPDQHRKVLKVMDMHSMMKGSGEAMAALAKNMPKKDKPDAEKKKPNDLDNFVKTGKTKQVFGYTAEEYSKHFTKEEDGKVHSGTMSVWYAKVDFDPQMMFSMGMGSIAGGGAQAKMNQSHSNNMLGMAITQKNYLMVEIDASETGGKSGTAMKVVSIEKINFDKSTEGYFIKNYAGLSMKEMMQKESEEK
Ga0370481_0000003_141352_141798F080676N/AMKKIITLFAGIFFIAASCEKDRINDNFQDNTSISNIDGKWKVVSYEDFEKSSKTVKTDVDSWNGLDVILTFSNDSIYGYCTTNYMTGKYSLSGRNIHIISYQGTKIGQPEWGNMWSKVIYDLESFQVNEHQLRLYYDGAEKSVTLSKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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