Scaffold Ga0335052

Basic Information
Taxon OID	3300034279 Open in IMG/M
Scaffold ID	Ga0335052_0000219 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034279 Open in IMG/M

Scaffold ID

Ga0335052_0000219 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35170
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (26.53%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

35170

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (26.53%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F025680	Metagenome	200	N
F033329	Metagenome	177	N
F034061	Metagenome	175	N
F060610	Metagenome	132	Y
F065376	Metagenome	127	Y
F070850	Metagenome	122	Y
F100269	Metagenome	102	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335052_0000219_10853_11761	F008936	N/A	MASFDELVKRKIKLLETVPEEIATAAERTQREAWRKIAPLLSEMDVDAQGNIAQTEDNVRRIGLITEELNKVLAGGEYRAAVQSFLASIDEGVQLTDEIAKKIDSTFEPDNVKRQLLAISKQNAINAFFGSGLRENVTQPFLEQLTANVAARAPLREAVIALQGVIEGTDANDGRLLANVRTTANTAQAIADRSYAAAVNEELGIEYFQYLGGEIPTTRPFCEHREGEIYHRREIEAWGDGKNSAGINDIRNGTWAGRIDGTDSRSIFTFVGGWNCRHFLVPVIKQRVPASVIARAEAEGFT
Ga0335052_0000219_14028_15065	F034061	N/A	MCYEKLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRAFAWRKMSTDILSRLNPMMKADTVVESKRIGQVVTNSSNVDLALGAGKYAGIRVTIDPNTASFLNFYLSNFQIDIYTMATPVEIFVYDMATLKLIDSFFYQSEAVEEFIGKTFRANRRKMDLAFVYESLYDTTRMVPKRGSCTDCGGNLRAVHVCPFVDAIGIELTTDGFNVLSSKSKKYTQGMSMVYNVNCDREAWLCSIAGLMAMPLAYATAVEIYNYGLTISPNQRVNTTVSVNTGFATSDPNDGMIAGRDIAATRYSEELTAMLQNMRMPDDNTCFDCRRNMKYVTALP
Ga0335052_0000219_20799_21275	F060610	N/A	MDEGRDSTYTTIDEGCVVGIGCKVHTHHHTIHIEPKIVYQSMVKFTIFGKQYCTNQWGQTYELPADDPIPEPKPMQQIYASDTITPTTSAFLLAPKPEAKIIIKPRTEYTEFKPTMDGPVMGTLLVFTIYITAHWAWNSMAAWNNLYSELSACLRSSS
Ga0335052_0000219_21980_22627	F100269	N/A	MASVRTETIYLIALIVLLFLLLKTCGENIADDYRLKHTIYEDSIVIASQKKIIAQAGSDAAKQAQQIAELEVKVKNASEVVKIETRTIIKTQIKLGDTVMIEKKPYIQLPKPFLKSTEWYTIGGMINRLGWLHIDSLVIPAKFTYAVGDTMRTGFVNRLLNKKDTVVRLRVDNPNVQVVGLENIYIKQDKKWHQTTAFKVGVGVLIGVAAVSAAK
Ga0335052_0000219_24038_24694	F065376	N/A	MNAANIDNITDFYKSLNSTKMLEAQSMIKGAPSAIEDKLTYDMSAVSIKAANDAIKHIETNRKLVTLPLDTYKKEIMEVERDAVAPLKAYIEERKQMMIDYSNELAVKKAVADAKIAQDAADALKSAVTSDVSGIFATFTDATTTTTLELDHTKNIRISKKAEIVGEVDWATLLWTLMQAEMFDVAELLRKLPKAMEITNIAEIRGIELTEVKTQVIR
Ga0335052_0000219_25704_26267	F033329	GAG	MSRDIYNSIEAINASSIKRHFTGSIQYAAGALERGAEFHRNLLETDPKDMPPNARLIYDAIMKHPMLRLVFEKSAKEITFIKEIEIDGRKVAAKGILDLHCPMYSINADIKTTSCTNLRAFASDMTKHYNHIQAVWYSYLTGYSPTNFYYIGVPNKFKGELFIHRHTADEIDTAENLIREYLVHRGL
Ga0335052_0000219_35_661	F025680	N/A	MKYIKELKGRLRSLWGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGAEMELILGEMEKALGAGLSNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWLVRDDEDPNIVNSDIHNYKLELFEQLSKGGAKDFFSSLGIDPLMPLLTMSPEDFQTLWEYNLVQQRNLKESLFRLNSHRESGRRKQETT
Ga0335052_0000219_6853_7392	F005050	N/A	MACVSYCDTTLLEHDLVVCNEYKLGGVSAIIIGACGSELVNPSSNEEIDEMLISGDARMISDIRFALPAGSPITVDSPIGCGTSIRINEDRTATLYDANVTDGNSTFYNDINKRKIAWILAYMCDSGKVLYIDSPVGITTSANFILPEQNNELQRYEVTFSWRNKDIPAQYDAPPGVFS
Ga0335052_0000219_7392_8345	F070850	AGG	MTEEQTQTTQSITPTTGVVLLAFGKAQYYWATYNLVFSIRKHNPNVRITVLFEDIGKALSHCPEIVDYVEQVGSIDAEDIYTNKKLDPGKVKINLYKYLPYDCNLYLDVDAIALKDIQPMIDELAQSGKNYISHTVGYHTIDKGRDFKEMQWAWADKMWAHFNLLESYVMPAINSSMQWIVKGSQSEALYRTAKDLYFNNPIPVNELRMKWGGGQPDELYMNVALAILGIDPALKTYTRNDGSEGGMIHFAMQRGLSFEKITENYYLQSYYGGARFTPRFYIDWLDRMLSADFKAIGKRHIYLISRIAENKYADGKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335052_0000219

Overview

Ecosystem & Geography

Associated Families

Sequences