NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0372943_0000349

Scaffold Ga0372943_0000349


Overview

Basic Information
Taxon OID3300034268 Open in IMG/M
Scaffold IDGa0372943_0000349 Open in IMG/M
Source Dataset NameForest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20099
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Eldorado National Forest, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.7833Long. (o)-120.2976Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010958Metagenome / Metatranscriptome297Y
F101095Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0372943_0000349_1195_1593F101095GGTGGVREREHDAVREARDALVVIGAVTPPLVILSVLFGVATDELDEFLRWIAGTLLMASVLLVCLASALLVADRLARSWWNVRPHALRRLQLIPGSLGVALLLVAGYPTTEPVIIGLSVVALILGALVAAGAALDL
Ga0372943_0000349_6124_6564F010958GGAMRYRLCDTAQDVSGIAVHLGISAEPFADEVPYELSLHAGGLQVAHVERATLTPAELFALGHALLDAAADGFGHFVPADEVFGLDLAPPSVPVAIDEVGITAWVDAGRAAGRTATRSGVAVQLVVDAPALAMVAEAVCDDAARVLSR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.