NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335065_0083511

Scaffold Ga0335065_0083511


Overview

Basic Information
Taxon OID3300034200 Open in IMG/M
Scaffold IDGa0335065_0083511 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2187
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011226Metagenome / Metatranscriptome293Y
F011227Metagenome / Metatranscriptome293Y
F047481Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0335065_0083511_288_584F011226N/AMAKQISPVNVWVNGESKSAEYFQVTCINDNYESSATNYWQLFTKNVDAEGVESQGEQVAQGNLTIQGEDYVLWGDQPAMAINAWIYNWSAEKLNLTII
Ga0335065_0083511_610_741F011227N/AMTLTELKAAAYDLLANLEHLQKQLQEVNQKIAEELQKEKQENG
Ga0335065_0083511_734_892F047481GAGMDSKSVGMCVATILIKVWADIALSEVGVVVAIFAGLTTIVYNLVRLYKELKK
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