NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335065_0057100

Scaffold Ga0335065_0057100


Overview

Basic Information
Taxon OID3300034200 Open in IMG/M
Scaffold IDGa0335065_0057100 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2708
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011367Metagenome / Metatranscriptome291Y
F016494Metagenome / Metatranscriptome246N
F019949Metagenome / Metatranscriptome226N

Sequences

Protein IDFamilyRBSSequence
Ga0335065_0057100_1451_1918F019949AGGLLYNNSITEDEAIKEVLREELEKSIDKSVIFQLAFNTFKIEMQEIKLLRLVEKLLYTVDKMHNLSPLQKARKFSKIYELKQKIIQINLNWKISDSFHLKKYKILTLIDKIDVKEEYNSVANEEIYQQLINEVETAKRTNSTWQLDKELIIIKKTE
Ga0335065_0057100_2087_2602F011367N/AMEESKNLEVKEIDSHWSKEPSESESRCHNSISHELEILDRILSEMISNIGNSSEDTILLKLRECLGCISDIIIHASQFIDQTQAVERKHPIEFNSLQEGIRINMTKTLTITSKLRERNLLQLLPLVKDLTLDLSEIKILVSRTTLRQIENFLERYRFKKSYIRRKIESFQT
Ga0335065_0057100_666_1073F016494N/AMSQKDNNSEEVTIDNFTELTQLVKSTLQTVDELFPPKPEFSFENMVVQFYTLKNRIKKIDPSWKFENTDTSYVFEILKLLDAVNTEEIPDLQQNAKICQRLLHRVRIMRQINPSWSLDVEGIIKFLYPTLNTQIS
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