| Basic Information | |
|---|---|
| Taxon OID | 3300034174 Open in IMG/M |
| Scaffold ID | Ga0334932_000002 Open in IMG/M |
| Source Dataset Name | Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 619337 |
| Total Scaffold Genes | 553 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 379 (68.54%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 34.7856 | Long. (o) | -115.66 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015256 | Metagenome | 256 | Y |
| F103807 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334932_000002_107106_107363 | F103807 | GGAGG | MGEIKKGRTNIIAAVIGVLSIAAVAIWQFYLFVTFKSANGVVDVQGGTHHLWWAIGIGFIACLVGFLAFSVLLRYDKNDEMHITS |
| Ga0334932_000002_39296_39418 | F015256 | AGGAG | MRRNPLFAVLGLVLLFGGAGTSSAQVKRVQMHIAGYLCGN |
| Ga0334932_000002_98304_98426 | F015256 | AGGAG | MRRYVSLALLGLVLLFGGATSSRAEVKRVQMHIAGYLCGN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |