NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334925_000020

Scaffold Ga0334925_000020


Overview

Basic Information
Taxon OID3300034173 Open in IMG/M
Scaffold IDGa0334925_000020 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 21HNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)138994
Total Scaffold Genes124 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)75 (60.48%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004903Metagenome / Metatranscriptome419Y
F006090Metagenome382Y

Sequences

Protein IDFamilyRBSSequence
Ga0334925_000020_39478_40113F006090N/AMSLLAQRSGPPSPLPRLDGREVLVGPDPSVCKVKGVMFGGRKQFLLDTLGEQDFAAFLNKLTPRTRSYTRTPLASSWLEFDSLIELDRAIYEELHARYPHVLALIGAASAELGIGRVYRSLDSEELLQFLANNALFHDQYQKFGSVSFEKTPKGARMTYTNYPCYSPIYCASAAGFFLESILRHGGTDPNVTETKCQCHGDKTCTYEMTWR
Ga0334925_000020_42079_42294F004903N/AVSRYLQKISLRPYSDVEVWTGWELEGRNGEVEGLILADGLSPEEVARRYGVTEFHKIPPEYLADGEFKARS
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