NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334913_014667

Scaffold Ga0334913_014667


Overview

Basic Information
Taxon OID3300034172 Open in IMG/M
Scaffold IDGa0334913_014667 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1805
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021173Metagenome / Metatranscriptome220N
F061624Metagenome / Metatranscriptome131Y
F064462Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0334913_014667_2_265F061624N/ALEPALRELCEGLGWSVVRLVEDALPAIDPVRRRVPGADDEGAFLAWAYTLAVDEALDRLAARGLVTPPPTGVTAVRVTDPALAGAAL
Ga0334913_014667_343_501F064462N/AVEEAMPADLVAIAILVLAALTAPLAADFRRRLATRRFDAIYERNLLRRTGRG
Ga0334913_014667_575_862F021173AGGGGGMATPVIISLLVGLVAGGAFMAMWAANRIEEEGVRQFDRGFERGRWLTDISVAKAVEDQDRARRVGLLVAGTRQPSGPPTTRPPGQEPRPSLLVIP
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