NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334913_004648

Scaffold Ga0334913_004648


Overview

Basic Information
Taxon OID3300034172 Open in IMG/M
Scaffold IDGa0334913_004648 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3862
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009632Metagenome / Metatranscriptome315Y
F012432Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0334913_004648_1807_2328F009632AGGAGMRWRRAATVGLVAFALLPLARPATAVTYVGLHDLTCGGATTEGTGMPERAGLEVALVDPASDRTLSRARVTTSASGDFEWRAKVSLSGMRAVRAVVHEPGRSAPLAWVEHSLARSCPLAYTGPNRTLSLVGVGLSAFTLGVLVLIAFAYQGRHAGAGGRHLAAPYRPHRAPVR
Ga0334913_004648_487_927F012432GGCGGMWSLPRPLDAALPDHSKPPLADRSGACAMCTAVRIVVAAADRERRLELRRAAVTAEWEVVGEADGPDAAYAEAVERRARFLVLDASAAGPRPQVLVRRLRSTSPNAFVVGVGEVEGVDATVDAGALDGLRDAMRDLLHQSGDHQHA
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