| Basic Information | |
|---|---|
| Taxon OID | 3300034163 Open in IMG/M |
| Scaffold ID | Ga0370515_0004121 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7193 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Alaska | |||||||
| Coordinates | Lat. (o) | 64.9123 | Long. (o) | -147.839 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003851 | Metagenome / Metatranscriptome | 465 | Y |
| F067465 | Metagenome / Metatranscriptome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0370515_0004121_6618_6896 | F003851 | N/A | MVTSMKHRTLAAVASRTIDEDAKRVLRALEEATHNHVNTNDPIMEQLKQCPEAFKVGEILGKAFDSLKYAQDGSELGDRHLPPSGVVIPPLV |
| Ga0370515_0004121_6893_7192 | F067465 | N/A | MIGLPLDVTLPRLKGIRWRYCTRWDEGPAAVLGMSMLRLGICRPDDWSGSAVDFVERGFRRFCSRSRAVEAKRVWVGDLRITDSLFDLTEQERNQVEAGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |