| Basic Information | |
|---|---|
| Taxon OID | 3300034163 Open in IMG/M |
| Scaffold ID | Ga0370515_0002394 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9368 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Alaska | |||||||
| Coordinates | Lat. (o) | 64.9123 | Long. (o) | -147.839 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F046771 | Metagenome / Metatranscriptome | 150 | Y |
| F093095 | Metagenome / Metatranscriptome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0370515_0002394_5126_5650 | F046771 | GAG | MTIKKRLLFSALVAVLFLAASCHRSGEKKFEPSALASGLYSGQSLQAVERKLDMMAGSFDILEDRTPLPSDARPPYRLLVISRKNARAEGQAGELVLTFFNDRLMTSQFFPAEMASARAAVEAGQRLSLADGEAHIQPSTRVWVGKDEGGRSYIGWIDKTLQAEQDAWVKQYGQ |
| Ga0370515_0002394_7337_7549 | F093095 | GAG | MHERETMTDNDPKRTFLQNSVHNFFALYLGVTPPAPGKEGFYAALLLAVALLLIGAGYLMVRFLLGQVLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |