| Basic Information | |
|---|---|
| Taxon OID | 3300034132 Open in IMG/M |
| Scaffold ID | Ga0334915_000318 Open in IMG/M |
| Source Dataset Name | Biocrust microbial communities from Mojave Desert, California, United States - 11HMC |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9206 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 34.7856 | Long. (o) | -115.66 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015476 | Metagenome / Metatranscriptome | 254 | Y |
| F090727 | Metagenome / Metatranscriptome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334915_000318_249_599 | F015476 | N/A | MDVLRNLFGNVTAGIIRLLVTVGIIAAVGFFLVKPALETTRDISRETNQSIQSGFQQSDLTNINKTIDDVNRQVQREIKKSLRTSKQQGNADKLINCIQRAHQDVNKIQRCSQRFQ |
| Ga0334915_000318_3399_3824 | F090727 | N/A | MMPAAHLANIEGAVLDACAAEVEWPGRIAAGIYAGVDYAIAHPEVAEVLAQRTSPGADATHRYEVIIGRLAGFLRAHAPIGQRLPGSTDEALVASIVGLVGDHLRIGRLDRLTELRPDLVLLTLLPYLGFNEAQRWANLPR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |