| Basic Information | |
|---|---|
| Taxon OID | 3300034121 Open in IMG/M |
| Scaffold ID | Ga0335058_0036945 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2874 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000331 | Metagenome / Metatranscriptome | 1285 | Y |
| F024000 | Metagenome / Metatranscriptome | 208 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335058_0036945_151_600 | F000331 | AGGA | MMRTAEIDMADSVHPADIDTFIDNAVWAIRSTYHTVLKASPGAAIFGRDMLFDIPFIADWHKIGDYRQRQTDRSNIRENNKRVDYDYKVGDKVLIRKDGILRKAESIWRKEPWTITTVHTNGTIRIQCGTKSERINIRRVTPFSEEILI |
| Ga0335058_0036945_1727_2872 | F024000 | N/A | MSSILLTELTDQECEKGQLTQRPPIPYAISKAEITSKASRETVKMKTPEGEVKLAVLGDSPGAEEYLQHHNAFLRFLARKKIDVEMTKVTKAVAKATALVRVLARIPNEETEPEMTLRISRWEAAEEELTKTEAQESTQVGLVYDLFRKTLKDDPELQWDRIVEDMHLKDPWEDLRGVKHDGLRRKSVKSLQDCIDFHKLTVYSVDAAERQRFYMMCNLKKPAKSSIRAHVTRMETLNKHLGLLPTIKNSPQAVASTELGNVPFNETTLASIILSHLPVAWRTQYALTHALVPESPRAILVDLENIEKLFAEKANEAARANKAKVAATAKLAGEQVPRKGKRAHGGGPDKGTPKKGRTDKFCKWCKAVDGPFTTHNTTECRR |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |