NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335053_0091923

Scaffold Ga0335053_0091923


Overview

Basic Information
Taxon OID3300034118 Open in IMG/M
Scaffold IDGa0335053_0091923 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2109
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001129Metagenome / Metatranscriptome768Y
F009057Metagenome / Metatranscriptome323Y
F076011Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0335053_0091923_1681_1980F009057N/AMATFRKFAFPDAGTADKALKDLQPLDFAVPLGHLCAATDSEGNCIKTRPEFSVDILFHDTCPEDLAAFVVWPAPCGVHSFSGWEEQYHADHKEFATSPK
Ga0335053_0091923_1995_2108F076011N/AMGLFRRNPDQPKLPLMKSAVIALLRHLLTFIGGTLVAK
Ga0335053_0091923_20_250F001129N/AMRFVDAAVSGQVFDFIVVNAAATFTTLTGSGGEDLLTAYSLSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL
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