NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335053_0030718

Scaffold Ga0335053_0030718


Overview

Basic Information
Taxon OID3300034118 Open in IMG/M
Scaffold IDGa0335053_0030718 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3875
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005233Metagenome407Y
F090308Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0335053_0030718_3157_3858F090308GGAGMHETYLKLSANEIHNRLTERKLHPAEIERIKAEVADLKESLRVTRITRTQRKAEWDKVLQPLRYEINNARVGMRYGGEKSPQRIAAFSEYIRIMEKLIAMLDAPSKALDHTPIQIARDKGLPNDGEHWTDWIPARVKDKVSLLFDAVPVVPRGKRKTPFQRTMLPHQHETAKVRLLTKTRKEMESLERKAGIQPTDARTAKLAQMRRAIKIIEALDKNEAVPATWTKLHLQGD
Ga0335053_0030718_490_1068F005233N/AMLEHLINGEFEPSVVDMTAATPLPFADAAPADIIDAQVQTANWLKELELDDDEAESKADAQAARNSFASLVTGQPPQNTQQALANIKAPAAVQHLVGMLTAYDWAFVEQAKELRGYAVAQILEEVKHPDARIRLKALQMLGTVTEVALFTERVEVKKTEMSDMELETRIKEKLNRFMGVIDVIDVTEDKDEA
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