NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335033_0048394

Scaffold Ga0335033_0048394


Overview

Basic Information
Taxon OID3300034117 Open in IMG/M
Scaffold IDGa0335033_0048394 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2014-rr0124
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2607
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001834Metagenome / Metatranscriptome628Y
F016265Metagenome / Metatranscriptome248Y

Sequences

Protein IDFamilyRBSSequence
Ga0335033_0048394_3_410F016265N/ANVATFTTLGIHEFTEGQSVIITGCGSPYNGTRVVLADNLGQYTFSQSITNADILEANVIPSGVAALSGGSTYVGNAAVQSAVYTVSVEVFQARLAGGGQIEGVDFTSTPFRMGRSLFNKCVGLLGSYMDTESMAQ
Ga0335033_0048394_411_797F001834N/AMPSTILSAVRQPLATALAGVAGNVYAFVPESVIPPAVVCVPSSPYLEIETIGKSTIRCRVNMTITAAVAYNSNPASLDNIEQLVMSILAVIPNGYVVGSVERPTVTQVGASTLLISDINVSTYYTQTN
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