| Basic Information | |
|---|---|
| Taxon OID | 3300034116 Open in IMG/M |
| Scaffold ID | Ga0335068_0004474 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9344 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (50.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005633 | Metagenome / Metatranscriptome | 394 | Y |
| F009603 | Metagenome / Metatranscriptome | 315 | N |
| F013879 | Metagenome / Metatranscriptome | 267 | N |
| F017997 | Metagenome / Metatranscriptome | 237 | Y |
| F103242 | Metagenome / Metatranscriptome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335068_0004474_2_343 | F103242 | N/A | DAVQPLLVFDTEHMREVLQRLRKGSENHQWTVCSLPAPLEAEGAFASDSDTYWKHLDSHVLKPTANRAGRIKHLWFKRNTRWPDHLHDCELMQLAMVMLWNDLASTSSENSSS |
| Ga0335068_0004474_376_777 | F009603 | N/A | VLTYTVATKRSYLRTTYASKAALTLLEALTAKLTVAANAIESGQVVRSTSSSDVSVEFAEPGKGSASAGEMLEMWESLLSDYDLAVTLLAGDGIANPSDLQIYNKMLGTILVAVTRYYGDFTQFRREPTTRMS |
| Ga0335068_0004474_4495_4671 | F005633 | N/A | MRLATTIAVDKNGKSKVVHGPEIDASLQRDGFNTASVPEGGKLVLWIQGALAPKIRKG |
| Ga0335068_0004474_7321_7464 | F017997 | AGAAG | VNIVEQIITALLKWLTGLAKTEPTAEDAKQDSELKAKLLDRIDRAGG |
| Ga0335068_0004474_8581_9342 | F013879 | GGAG | MTPTVTVDTSRFDAAWKEYLPKTRRSLADAVNSRTFFLMLRLYILLPPKSPQAARNKILDYFNRPIGARRIDKKTGKFLGRSRELRLVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAQVRIVAGNQALINLANQYGLPQENVSMHRGSSAYAYNAKAGFSPSSHVRLNIGLADNQIGKVEAIYAKAMQQAYNDEAKELEGHITAAFQSAFDGSES |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |