NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364945_0001286

Scaffold Ga0364945_0001286


Overview

Basic Information
Taxon OID3300034115 Open in IMG/M
Scaffold IDGa0364945_0001286 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 29_s17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6959
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015847Metagenome251Y
F025527Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0364945_0001286_3581_4126F025527N/AMTNNSASLKQVPQTRTYYSSALRCIGHSLESLELKAVEVKTHGENYVIQAWNKGTSTSMDLERHCSPEDLRKLEIEGKEKRKTFSGPPNLLSLSQVLRLAGNYVDRMRGRLIRVSWQDQSDKIQSVTIQYEPCPVDRREQGESQTTVIEEVCVHIYKQRKKIAAAQEKNSHRPFVSVNNL
Ga0364945_0001286_6788_6949F015847N/AMKGGLWSPREDIATLEQKFKKSYIDEKYSLDEAEKKFAEWDKLLQQLFIRKRP

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